Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LENEJAKF_38 | 8117 | 7923 | CspA | 3.84e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LENEJAKF_45 | 8174 | 9043 | repUS67 | 883 / 1039 | 88.67 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LENEJAKF_2 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_5 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_6 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_12 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_14 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_15 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_16 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_17 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_18 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_19 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_20 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_21 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_22 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_23 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_25 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_26 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_27 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_28 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_29 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_30 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_31 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_32 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_33 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_34 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_36 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_37 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_38 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_39 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_40 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_41 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_42 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_43 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_44 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_45 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_46 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_47 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_48 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_49 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_50 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_51 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_52 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_53 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_54 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_55 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_56 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_57 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_58 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_59 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_60 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_61 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_62 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_63 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_64 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_65 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_66 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_67 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_69 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_70 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_71 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_72 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_73 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_74 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_75 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_76 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_77 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_78 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_80 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_81 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_82 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_83 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_84 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_85 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_86 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_87 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_88 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_89 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_91 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_92 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_93 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_94 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_95 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_96 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_97 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_98 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_99 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_100 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_102 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_103 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_104 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_105 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_106 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_107 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_108 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_109 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_110 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_111 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_114 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_115 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_116 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_117 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_118 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_119 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_120 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_121 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_122 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_123 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_125 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_126 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_127 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_128 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_129 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_141 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_142 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_143 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_144 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_145 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_153 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_154 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_155 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_156 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_157 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_166 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_167 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_171 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_178 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_180 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_182 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_183 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_184 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_185 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_189 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_190 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_193 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_196 | 1.0 | 0.0 | 1.0 |
| LENEJAKF_204 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_205 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_212 | 0.0 | 1.0 | 0.0 |
| LENEJAKF_213 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LENEJAKF_2 | 1261 | 22675 | False | Siphoviridae | VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0822, VOG0195, VOG0198, VOG0686, VOG3307, VOG5317, VOG5280, VOG4010 |
| LENEJAKF_26 | 13698 | 26036 | False | Siphoviridae | VOG4693, VOG2388, VOG1183, VOG7293, VOG0638, VOG0686, VOG9078, VOG7910, VOG4908, VOG0514, VOG0226, VOG4955, VOG5692, VOG7812, VOG3478, VOG0707, VOG9469, VOG1564, VOG2124, VOG1638, VOG3711, VOG8520, VOG4602, VOG6914 |
| LENEJAKF_45 | 15097 | 20883 | False | Unknown | VOG5721, VOG6031, VOG6524, VOG6246, VOG6941 |
| LENEJAKF_47 | 4206 | 23690 | False | Siphoviridae | VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG1353, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG4856, VOG5601 |
| LENEJAKF_77 | 1768 | 26921 | False | Siphoviridae | VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1414, VOG0198, VOG1183, VOG0686, VOG3307, VOG1298, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322 |
| LENEJAKF_98 | 10125 | 38063 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG4545, VOG0801, VOG3462, VOG10972, VOG3405, VOG9997, VOG4856, VOG4334, VOG4705, VOG7368, VOG9998, VOG1637 |
| LENEJAKF_117 | 23676 | 30104 | False | Unknown | VOG4570, VOG0322, VOG6464, VOG0020, VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)