Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDGADPLF_66 | 1340 | 1825 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EDGADPLF_66 | 1340 | 1825 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDGADPLF_66 | 1343 | 1825 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDGADPLF_82 | 6165 | 5971 | CspA | 1.20e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDGADPLF_9 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_10 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_11 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_17 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_18 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_19 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_20 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_21 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_32 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_36 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_37 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_38 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_51 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_52 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_53 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_54 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_55 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_64 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_65 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_66 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_71 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_72 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_73 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_74 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_75 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_76 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_77 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_78 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_81 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_82 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_83 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_84 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_85 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_86 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_97 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_98 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_110 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_111 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_114 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_115 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_116 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_117 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_125 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_126 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_127 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_132 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_134 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_135 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_138 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_139 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_141 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_142 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_143 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_144 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_145 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_146 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_147 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_148 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_149 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_150 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_151 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_152 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_153 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_154 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_155 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_156 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_158 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_159 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_160 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_161 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_162 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_163 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_164 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_165 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_166 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_167 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_169 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_170 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_171 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_172 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_173 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_174 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_175 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_176 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_177 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_178 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_180 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_181 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_182 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_183 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_184 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_185 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_186 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_187 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_188 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_189 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_191 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_192 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_193 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_194 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_195 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_196 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_197 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_198 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_199 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_200 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_202 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_203 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_204 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_205 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_206 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_207 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_208 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_209 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_210 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_211 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_212 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_213 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_214 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_215 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_216 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_217 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_219 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_235 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_236 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_237 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_240 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_245 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_246 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_247 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_248 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_249 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_250 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_251 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_254 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_255 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_256 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_257 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_262 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_271 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_272 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_274 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_285 | 1.0 | 0.0 | 1.0 |
| EDGADPLF_286 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_287 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_289 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_290 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_291 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_292 | 0.0 | 1.0 | 0.0 |
| EDGADPLF_293 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDGADPLF_163 | 2701 | 9981 | False | Siphoviridae | VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502 |
| EDGADPLF_198 | 1764 | 19191 | True | Siphoviridae | VOG4548, VOG0198, VOG6154, VOG4581, VOG4571, VOG4544, VOG6875, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG0221, VOG0221, VOG0221 |
| EDGADPLF_208 | 15865 | 23748 | False | Myoviridae | VOG0083, VOG0382, VOG0384, VOG10104, VOG0226 |
| EDGADPLF_213 | 13403 | 14388 | False | Unknown | VOG4552 |
| EDGADPLF_213 | 30232 | 55359 | False | Siphoviridae | VOG8294, VOG0703, VOG8917, VOG4705, VOG8438, VOG1975, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG9331, VOG0866 |
Phigaro v2.4.0 (Database: Jan. 2024 release)