Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PCHEHPGP_205 | 6294 | 6100 | CspA | 3.06e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCHEHPGP_2 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_4 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_5 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_17 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_18 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_43 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_64 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_86 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_91 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_94 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_96 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_97 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_98 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_99 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_100 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_120 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_121 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_122 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_135 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_138 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_139 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_140 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_141 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_146 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_152 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_157 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_183 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_184 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_185 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_186 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_188 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_189 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_192 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_193 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_194 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_195 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_196 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_197 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_198 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_199 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_200 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_202 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_203 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_204 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_205 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_206 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_207 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_208 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_209 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_210 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_211 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_213 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_214 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_215 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_216 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_217 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_218 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_219 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_220 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_221 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_222 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_225 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_226 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_227 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_228 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_229 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_230 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_231 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_232 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_233 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_234 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_236 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_237 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_238 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_239 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_240 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_241 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_242 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_243 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_244 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_245 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_247 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_248 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_249 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_250 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_251 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_252 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_253 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_254 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_255 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_256 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_258 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_259 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_260 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_261 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_262 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_263 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_264 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_265 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_266 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_267 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_269 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_270 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_271 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_272 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_273 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_274 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_275 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_276 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_277 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_278 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_280 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_281 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_282 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_283 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_284 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_285 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_286 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_290 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_305 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_306 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_316 | 1.0 | 0.0 | 1.0 |
| PCHEHPGP_332 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_333 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_334 | 0.0 | 1.0 | 0.0 |
| PCHEHPGP_348 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCHEHPGP_207 | 29012 | 46015 | False | Siphoviridae | VOG4841, VOG4581, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG4545 |
| PCHEHPGP_208 | 2001 | 28100 | False | Siphoviridae | VOG4705, VOG4334, VOG4856, VOG9997, VOG1050, VOG10972, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG0866, VOG9312, VOG4581, VOG4841, VOG0198 |
| PCHEHPGP_277 | 2891 | 37173 | False | Siphoviridae | VOG0641, VOG0648, VOG7145, VOG10608, VOG1335, VOG0083, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689, VOG0198, VOG6140, VOG4693, VOG2388, VOG1183, VOG8916, VOG11004, VOG4552, VOG5133, VOG0189, VOG4566, VOG4799 |
| PCHEHPGP_334 | 36235 | 39839 | False | Unknown | VOG0226, VOG10104 |
Phigaro v2.4.0 (Database: Jan. 2024 release)