Probiotic potential risk score


ARGs VFs PGs PPRS
4014.12

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
HKKJCJDG_1061057212491tet(W)ARO:3000194tet(W)97.03100.00AJ222769.3
HKKJCJDG_12844106329tet(W)ARO:3000194tet(W)97.03100.00AJ222769.3
HKKJCJDG_1056642583tet(W)ARO:3000194tet(W)97.03100.00AJ222769.3
HKKJCJDG_1042402159tet(W)ARO:3000194tet(W)97.03100.00AJ222769.3

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
HKKJCJDG_1042402159tet(W)Doxycycline, Tetracycline, Minocycline99.06100.00FN396364

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
HKKJCJDG_1042432159tet(W)tetracycline resistance ribosomal protection protein Tet(W)BLASTX99.84100.00WP_000691721.1
HKKJCJDG_1056642580tet(W)tetracycline resistance ribosomal protection protein Tet(W)BLASTX99.84100.00WP_000691721.1
HKKJCJDG_1061057212488tet(W)tetracycline resistance ribosomal protection protein Tet(W)BLASTX99.84100.00WP_000691721.1
HKKJCJDG_12844136329tet(W)tetracycline resistance ribosomal protection protein Tet(W)BLASTX99.84100.00WP_000691721.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HKKJCJDG_11070476853CspA1.00e-28cold shock protein83.0898.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HKKJCJDG_100.01.00.0
HKKJCJDG_210.01.00.0
HKKJCJDG_441.00.01.0
HKKJCJDG_460.01.00.0
HKKJCJDG_570.01.00.0
HKKJCJDG_640.01.00.0
HKKJCJDG_750.01.00.0
HKKJCJDG_761.00.01.0
HKKJCJDG_770.01.00.0
HKKJCJDG_780.01.00.0
HKKJCJDG_800.01.00.0
HKKJCJDG_810.01.00.0
HKKJCJDG_820.01.00.0
HKKJCJDG_831.00.01.0
HKKJCJDG_840.01.00.0
HKKJCJDG_850.01.00.0
HKKJCJDG_860.01.00.0
HKKJCJDG_870.01.00.0
HKKJCJDG_880.01.00.0
HKKJCJDG_891.00.01.0
HKKJCJDG_910.01.00.0
HKKJCJDG_920.01.00.0
HKKJCJDG_931.00.01.0
HKKJCJDG_940.01.00.0
HKKJCJDG_950.01.00.0
HKKJCJDG_961.00.01.0
HKKJCJDG_970.01.00.0
HKKJCJDG_980.01.00.0
HKKJCJDG_990.01.00.0
HKKJCJDG_1000.01.00.0
HKKJCJDG_1021.00.01.0
HKKJCJDG_1031.00.01.0
HKKJCJDG_1041.00.01.0
HKKJCJDG_1051.00.01.0
HKKJCJDG_1060.01.00.0
HKKJCJDG_1070.01.00.0
HKKJCJDG_1080.01.00.0
HKKJCJDG_1090.01.00.0
HKKJCJDG_1100.01.00.0
HKKJCJDG_1111.00.01.0
HKKJCJDG_1140.01.00.0
HKKJCJDG_1151.00.01.0
HKKJCJDG_1160.01.00.0
HKKJCJDG_1170.01.00.0
HKKJCJDG_1180.01.00.0
HKKJCJDG_1190.01.00.0
HKKJCJDG_1201.00.01.0
HKKJCJDG_1210.01.00.0
HKKJCJDG_1221.00.01.0
HKKJCJDG_1230.01.00.0
HKKJCJDG_1250.01.00.0
HKKJCJDG_1260.01.00.0
HKKJCJDG_1270.01.00.0
HKKJCJDG_1281.00.01.0
HKKJCJDG_1290.01.00.0
HKKJCJDG_1300.01.00.0
HKKJCJDG_1310.01.00.0
HKKJCJDG_1320.01.00.0
HKKJCJDG_1330.01.00.0
HKKJCJDG_1340.01.00.0
HKKJCJDG_1360.01.00.0
HKKJCJDG_1370.01.00.0
HKKJCJDG_1380.01.00.0
HKKJCJDG_1390.01.00.0
HKKJCJDG_1400.01.00.0
HKKJCJDG_1460.01.00.0
HKKJCJDG_1470.01.00.0
HKKJCJDG_1490.01.00.0
HKKJCJDG_1500.01.00.0
HKKJCJDG_1510.01.00.0
HKKJCJDG_2080.01.00.0
HKKJCJDG_2090.01.00.0
HKKJCJDG_2100.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HKKJCJDG_44269135810FalseSiphoviridaeVOG4824, VOG0703, VOG0641, VOG4705, VOG8438, VOG4752, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG7111, VOG6140, VOG0686, VOG5317, VOG5280, VOG5562, VOG5998, VOG5278, VOG0275, VOG0195
HKKJCJDG_842893157098FalseSiphoviridaeVOG5361, VOG9998, VOG0703, VOG1637, VOG5070, VOG4973, VOG3463, VOG3462, VOG0801, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841
HKKJCJDG_848095889311FalseSiphoviridaeVOG4803, VOG4693, VOG5141, VOG1183, VOG8727, VOG0638, VOG4799, VOG0514, VOG0226, VOG4955, VOG5692, VOG7812, VOG3478, VOG0707, VOG9469, VOG1564, VOG2124

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements