Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PFPHHAOO_53 | 5065 | 6984 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| PFPHHAOO_30 | 4471 | 6390 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| PFPHHAOO_42 | 664 | 2583 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| PFPHHAOO_41 | 240 | 2159 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PFPHHAOO_30 | 4471 | 6390 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PFPHHAOO_30 | 4471 | 6387 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| PFPHHAOO_41 | 243 | 2159 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| PFPHHAOO_42 | 664 | 2580 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| PFPHHAOO_53 | 5068 | 6984 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PFPHHAOO_38 | 7047 | 6853 | CspA | 1.00e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PFPHHAOO_9 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_10 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_14 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_15 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_16 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_17 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_18 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_19 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_20 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_21 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_22 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_23 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_25 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_26 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_27 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_28 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_29 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_30 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_31 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_32 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_33 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_34 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_36 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_37 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_38 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_39 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_40 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_41 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_42 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_43 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_44 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_45 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_47 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_48 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_49 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_50 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_51 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_52 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_53 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_54 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_55 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_56 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_58 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_59 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_61 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_62 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_63 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_64 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_65 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_66 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_67 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_69 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_86 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_87 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_96 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_97 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_98 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_102 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_103 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_110 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_133 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_134 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_135 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_136 | 1.0 | 0.0 | 1.0 |
| PFPHHAOO_139 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_140 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_152 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_159 | 0.0 | 1.0 | 0.0 |
| PFPHHAOO_160 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PFPHHAOO_19 | 28931 | 57098 | False | Siphoviridae | VOG5361, VOG9998, VOG0703, VOG1637, VOG5070, VOG4973, VOG3463, VOG3462, VOG0801, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
| PFPHHAOO_19 | 80958 | 89311 | False | Siphoviridae | VOG4803, VOG4693, VOG5141, VOG1183, VOG8727, VOG0638, VOG4799, VOG0514, VOG0226, VOG4955, VOG5692, VOG7812, VOG3478, VOG0707, VOG9469, VOG1564, VOG2124 |
| PFPHHAOO_136 | 4225 | 36434 | False | Siphoviridae | VOG4824, VOG0703, VOG0641, VOG4705, VOG8438, VOG4752, VOG3462, VOG0801, VOG6163, VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG7111, VOG6140, VOG0686, VOG5317, VOG5280, VOG5562, VOG5998, VOG5278, VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)