Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJCEFHOJ_62 | 10655 | 12574 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| LJCEFHOJ_60 | 5065 | 6984 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| LJCEFHOJ_32 | 4471 | 6390 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| LJCEFHOJ_50 | 664 | 2583 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LJCEFHOJ_32 | 4471 | 6390 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJCEFHOJ_32 | 4471 | 6387 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| LJCEFHOJ_50 | 664 | 2580 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| LJCEFHOJ_60 | 5068 | 6984 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| LJCEFHOJ_62 | 10655 | 12571 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LJCEFHOJ_44 | 7047 | 6853 | CspA | 1.00e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJCEFHOJ_5 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_6 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_7 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_15 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_17 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_18 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_19 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_20 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_21 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_22 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_23 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_25 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_26 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_27 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_28 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_29 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_30 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_31 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_32 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_33 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_34 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_36 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_37 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_38 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_39 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_40 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_41 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_42 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_43 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_44 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_45 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_47 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_48 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_49 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_50 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_51 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_52 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_53 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_54 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_55 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_56 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_57 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_58 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_59 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_60 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_61 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_62 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_63 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_64 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_65 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_66 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_67 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_70 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_71 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_72 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_73 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_74 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_81 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_91 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_92 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_103 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_104 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_105 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_109 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_110 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_112 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_118 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_124 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_143 | 1.0 | 0.0 | 1.0 |
| LJCEFHOJ_144 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_145 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_148 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_160 | 0.0 | 1.0 | 0.0 |
| LJCEFHOJ_165 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJCEFHOJ_18 | 28931 | 57098 | False | Siphoviridae | VOG5361, VOG9998, VOG0703, VOG1637, VOG5070, VOG4973, VOG3463, VOG3462, VOG0801, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
| LJCEFHOJ_18 | 80958 | 89311 | False | Siphoviridae | VOG4803, VOG4693, VOG5141, VOG1183, VOG8727, VOG0638, VOG4799, VOG0514, VOG0226, VOG4955, VOG5692, VOG7812, VOG3478, VOG0707, VOG9469, VOG1564, VOG2124 |
| LJCEFHOJ_40 | 24997 | 55192 | False | Siphoviridae | VOG0195, VOG0275, VOG5278, VOG5998, VOG5562, VOG5280, VOG5317, VOG0686, VOG6140, VOG7111, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG4752, VOG8438, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)