Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EMKMLPHE_41 | 11147 | 13066 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EMKMLPHE_41 | 11147 | 13066 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EMKMLPHE_41 | 11150 | 13066 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EMKMLPHE_34 | 8374 | 8180 | CspA | 1.08e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EMKMLPHE_3 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_4 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_5 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_6 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_7 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_8 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_9 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_10 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_11 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_12 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_14 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_15 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_16 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_17 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_18 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_19 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_20 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_21 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_22 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_23 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_25 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_26 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_27 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_28 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_29 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_30 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_31 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_32 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_33 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_34 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_36 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_37 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_38 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_39 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_40 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_41 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_42 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_43 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_44 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_45 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_46 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_47 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_48 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_49 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_50 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_51 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_52 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_53 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_54 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_55 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_56 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_57 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_58 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_70 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_71 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_77 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_79 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_81 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_82 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_87 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_93 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_112 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_113 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_130 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_137 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_143 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_146 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_147 | 1.0 | 0.0 | 1.0 |
| EMKMLPHE_148 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_149 | 0.0 | 1.0 | 0.0 |
| EMKMLPHE_150 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EMKMLPHE_23 | 32401 | 40754 | False | Siphoviridae | VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG7812, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799, VOG0638, VOG8727, VOG1183, VOG5141, VOG4693 |
| EMKMLPHE_23 | 64614 | 92781 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0801, VOG3462, VOG3463, VOG4973, VOG5070, VOG1637, VOG0703, VOG9998 |
| EMKMLPHE_147 | 2696 | 21105 | False | Siphoviridae | VOG9471, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866, VOG0198, VOG7111, VOG6140, VOG0686, VOG5317, VOG5280, VOG5562, VOG5998, VOG5278, VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)