Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AIFFGMME_138 | 10563 | 12482 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AIFFGMME_138 | 10563 | 12482 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AIFFGMME_138 | 10563 | 12479 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AIFFGMME_117 | 8374 | 8180 | CspA | 1.08e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AIFFGMME_14 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_29 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_52 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_63 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_77 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_78 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_79 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_82 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_83 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_84 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_85 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_86 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_87 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_88 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_89 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_91 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_92 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_93 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_94 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_95 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_96 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_97 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_98 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_99 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_100 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_102 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_103 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_104 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_105 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_106 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_107 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_108 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_109 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_110 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_111 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_114 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_115 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_116 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_117 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_118 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_119 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_120 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_121 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_122 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_123 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_125 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_126 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_127 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_128 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_129 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_130 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_131 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_132 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_133 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_134 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_136 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_137 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_138 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_139 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_140 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_157 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_168 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_169 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_175 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_188 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_189 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_190 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_191 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_193 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_208 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_209 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_210 | 0.0 | 1.0 | 0.0 |
| AIFFGMME_220 | 1.0 | 0.0 | 1.0 |
| AIFFGMME_221 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AIFFGMME_119 | 32401 | 40754 | False | Siphoviridae | VOG2124, VOG1564, VOG9469, VOG0707, VOG3478, VOG7812, VOG5692, VOG4955, VOG0226, VOG0514, VOG4799, VOG0638, VOG8727, VOG1183, VOG5141, VOG4693 |
| AIFFGMME_119 | 64614 | 92781 | False | Siphoviridae | VOG0866, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0801, VOG3462, VOG3463, VOG4973, VOG5070, VOG1637, VOG0703, VOG9998 |
| AIFFGMME_136 | 25005 | 58702 | False | Siphoviridae | VOG0195, VOG0275, VOG5278, VOG5998, VOG5562, VOG5280, VOG5317, VOG0686, VOG6140, VOG7111, VOG0198, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG0944, VOG0801, VOG3462, VOG4752, VOG8438, VOG4705, VOG0641, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)