Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ACEBLIHN_127 | 16429 | 16914 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| ACEBLIHN_127 | 897 | 2822 | tet(M) | ARO:3000186 | tet(M) | 97.82 | 100.31 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ACEBLIHN_127 | 16429 | 16914 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
| ACEBLIHN_127 | 897 | 2822 | tet(M) | Doxycycline, Tetracycline, Minocycline | 98.70 | 100.00 | X75073 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ACEBLIHN_127 | 16429 | 16911 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| ACEBLIHN_127 | 900 | 2822 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 98.44 | 100.00 | WP_000691727.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ACEBLIHN_226 | 18280 | 18086 | CspA | 2.51e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ACEBLIHN_16 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_17 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_31 | 1.0 | 0.0 | 1.0 |
| ACEBLIHN_32 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_45 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_47 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_48 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_49 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_50 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_51 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_52 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_65 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_70 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_82 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_90 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_102 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_103 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_104 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_105 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_106 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_107 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_108 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_109 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_110 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_111 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_114 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_115 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_116 | 1.0 | 0.0 | 1.0 |
| ACEBLIHN_117 | 1.0 | 0.0 | 1.0 |
| ACEBLIHN_118 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_119 | 1.0 | 0.0 | 1.0 |
| ACEBLIHN_120 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_121 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_122 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_123 | 1.0 | 0.0 | 1.0 |
| ACEBLIHN_125 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_126 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_127 | 1.0 | 0.0 | 1.0 |
| ACEBLIHN_128 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_129 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_130 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_131 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_132 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_133 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_134 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_136 | 1.0 | 0.0 | 1.0 |
| ACEBLIHN_137 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_138 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_139 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_140 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_141 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_142 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_143 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_145 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_147 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_148 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_149 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_153 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_175 | 1.0 | 0.0 | 1.0 |
| ACEBLIHN_179 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_206 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_207 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_208 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_218 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_226 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_230 | 0.0 | 1.0 | 0.0 |
| ACEBLIHN_231 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ACEBLIHN_109 | 19775 | 51329 | False | Siphoviridae | VOG0703, VOG8917, VOG9344, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1888, VOG0198, VOG3307, VOG0713, VOG3307, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG2228 |
| ACEBLIHN_148 | 1079 | 12999 | False | Siphoviridae | VOG5660, VOG0723, VOG4713, VOG4711, VOG4555, VOG4564, VOG0720, VOG1886, VOG0796, VOG0376, VOG8453, VOG5747 |
| ACEBLIHN_148 | 21709 | 23703 | False | Siphoviridae | VOG4552, VOG4322, VOG0806, VOG5063 |
Phigaro v2.4.0 (Database: Jan. 2024 release)