Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KGAGDCHG_84 | 74598 | 74404 | CspA | 6.83e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGAGDCHG_11 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_34 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_36 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_53 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_74 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_75 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_76 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_77 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_78 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_80 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_81 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_82 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_83 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_84 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_85 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_86 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_87 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_88 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_89 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_91 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_92 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_93 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_94 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_95 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_96 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_97 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_98 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_99 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_100 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_102 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_103 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_104 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_105 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_106 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_107 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_108 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_109 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_110 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_111 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_114 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_115 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_116 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_117 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_118 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_119 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_120 | 1.0 | 0.0 | 1.0 |
| KGAGDCHG_121 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_122 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_123 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_125 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_126 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_127 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_128 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_129 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_130 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_132 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_133 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_134 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_136 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_152 | 0.0 | 1.0 | 0.0 |
| KGAGDCHG_182 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGAGDCHG_93 | 2523 | 27462 | False | Siphoviridae | VOG7675, VOG6495, VOG9998, VOG4865, VOG0054, VOG1637, VOG4856, VOG5214, VOG10972, VOG0801, VOG4545, VOG0209, VOG4586, VOG0207, VOG0539, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556 |
| KGAGDCHG_94 | 37971 | 71170 | False | Siphoviridae | VOG0641, VOG5070, VOG4190, VOG6163, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG0198, VOG4690, VOG4010, VOG0686, VOG7265, VOG4693, VOG6495, VOG5278, VOG7264, VOG4548, VOG7263, VOG0322, VOG0321, VOG3478, VOG3622, VOG6495 |
| KGAGDCHG_96 | 99005 | 136499 | False | Myoviridae | VOG0703, VOG8917, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG2216, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4711, VOG10914, VOG4564, VOG0720, VOG4544, VOG0796, VOG4972, VOG0198, VOG4693, VOG7042, VOG1298, VOG9671, VOG0195, VOG0275, VOG8276, VOG0189, VOG8647, VOG0226, VOG0514, VOG0906, VOG0535, VOG9667 |
| KGAGDCHG_118 | 32778 | 38894 | False | Myoviridae | VOG0083, VOG0382, VOG0384 |
Phigaro v2.4.0 (Database: Jan. 2024 release)