Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HOOGCCJG_475373953933CspA3.72e-28cold shock protein83.0898.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HOOGCCJG_40.01.00.0
HOOGCCJG_100.01.00.0
HOOGCCJG_110.01.00.0
HOOGCCJG_120.01.00.0
HOOGCCJG_140.01.00.0
HOOGCCJG_150.01.00.0
HOOGCCJG_160.01.00.0
HOOGCCJG_170.01.00.0
HOOGCCJG_180.01.00.0
HOOGCCJG_191.00.01.0
HOOGCCJG_201.00.01.0
HOOGCCJG_211.00.01.0
HOOGCCJG_221.00.01.0
HOOGCCJG_230.01.00.0
HOOGCCJG_250.01.00.0
HOOGCCJG_260.01.00.0
HOOGCCJG_270.01.00.0
HOOGCCJG_280.01.00.0
HOOGCCJG_290.01.00.0
HOOGCCJG_301.00.01.0
HOOGCCJG_311.00.01.0
HOOGCCJG_320.01.00.0
HOOGCCJG_330.01.00.0
HOOGCCJG_340.01.00.0
HOOGCCJG_360.01.00.0
HOOGCCJG_370.01.00.0
HOOGCCJG_381.00.01.0
HOOGCCJG_391.00.01.0
HOOGCCJG_400.01.00.0
HOOGCCJG_410.01.00.0
HOOGCCJG_420.01.00.0
HOOGCCJG_430.01.00.0
HOOGCCJG_441.00.01.0
HOOGCCJG_451.00.01.0
HOOGCCJG_470.01.00.0
HOOGCCJG_480.01.00.0
HOOGCCJG_491.00.01.0
HOOGCCJG_500.01.00.0
HOOGCCJG_510.01.00.0
HOOGCCJG_520.01.00.0
HOOGCCJG_530.01.00.0
HOOGCCJG_540.01.00.0
HOOGCCJG_550.01.00.0
HOOGCCJG_630.01.00.0
HOOGCCJG_850.01.00.0
HOOGCCJG_860.01.00.0
HOOGCCJG_1020.01.00.0
HOOGCCJG_1030.01.00.0
HOOGCCJG_1271.00.01.0
HOOGCCJG_1340.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HOOGCCJG_3181806102219FalseMyoviridaeVOG0094, VOG5722, VOG4544, VOG5721, VOG6031, VOG6524, VOG6246, VOG1026, VOG6941, VOG6036, VOG7629, VOG9713, VOG5534, VOG6540, VOG1799, VOG0648, VOG0753, VOG0054
HOOGCCJG_552320131152FalseSiphoviridaeVOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG8065, VOG1183

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements