Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHJJINEL_34 | 8100 | 10019 | tet(W) | ARO:3000194 | tet(W) | 96.87 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EHJJINEL_34 | 8100 | 10019 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHJJINEL_34 | 8103 | 10019 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EHJJINEL_139 | 43886 | 44080 | CspA | 2.93e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EHJJINEL_34 | 2207 | 2983 | rep30 | 777 / 777 | 100.00 | CP002845 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EHJJINEL_12 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_31 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_32 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_33 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_34 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_36 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_48 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_49 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_50 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_66 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_67 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_102 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_103 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_104 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_105 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_106 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_107 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_108 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_109 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_110 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_111 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_114 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_115 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_116 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_117 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_118 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_119 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_120 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_121 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_122 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_123 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_125 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_126 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_127 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_128 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_129 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_130 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_131 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_132 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_133 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_134 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_136 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_137 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_138 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_139 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_140 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_141 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_142 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_143 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_144 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_145 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_147 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_148 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_149 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_155 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_157 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_163 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_164 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_174 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_187 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_188 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_190 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_191 | 1.0 | 0.0 | 1.0 |
| EHJJINEL_209 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_218 | 0.0 | 1.0 | 0.0 |
| EHJJINEL_219 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EHJJINEL_125 | 23384 | 40734 | False | Siphoviridae | VOG3490, VOG4714, VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG0267, VOG5458, VOG0650 |
| EHJJINEL_143 | 48883 | 77768 | False | Siphoviridae | VOG0686, VOG6140, VOG0198, VOG0866, VOG4841, VOG4581, VOG9312, VOG0866, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG6163, VOG0801, VOG3462, VOG3463, VOG4205, VOG4887, VOG7100, VOG8917, VOG0703 |
| EHJJINEL_148 | 42390 | 44274 | False | Siphoviridae | VOG0204, VOG4589, VOG0641, VOG9409 |
Phigaro v2.4.0 (Database: Jan. 2024 release)