Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AMFKPHAG_82 | 49909 | 50106 | CspA | 8.65e-30 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| AMFKPHAG_82 | 49909 | 50103 | CspR | 1.57e-28 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AMFKPHAG_59 | 4859 | 5926 | repUS73 | 1068 / 1101 | 96.25 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AMFKPHAG_11 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_19 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_20 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_21 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_22 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_23 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_24 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_25 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_26 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_27 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_28 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_29 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_30 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_31 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_32 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_33 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_34 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_35 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_36 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_37 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_38 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_39 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_40 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_41 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_42 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_43 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_44 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_45 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_46 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_47 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_48 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_49 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_50 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_51 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_52 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_53 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_54 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_55 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_56 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_57 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_58 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_59 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_60 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_61 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_62 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_63 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_64 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_65 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_66 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_67 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_68 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_69 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_71 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_72 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_73 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_74 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_75 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_76 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_77 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_78 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_79 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_80 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_81 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_82 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_83 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_84 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_85 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_86 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_87 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_88 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_89 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_90 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_91 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_92 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_93 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_94 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_95 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_96 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_97 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_98 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_99 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_100 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_101 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_102 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_103 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_104 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_105 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_106 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_107 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_108 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_109 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_110 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_112 | 1.0 | 0.0 | 1.0 |
| AMFKPHAG_113 | 0.0 | 1.0 | 0.0 |
| AMFKPHAG_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AMFKPHAG_30 | 14590 | 24807 | False | Myoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226 |
| AMFKPHAG_39 | 106895 | 142661 | False | Siphoviridae | VOG4821, VOG7340, VOG7424, VOG0862, VOG6495, VOG3622, VOG4552, VOG2228, VOG5645, VOG1309, VOG0186, VOG0226, VOG4566, VOG4559, VOG0198, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)