Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
AKFNOAOL_133112606113310WalR6.64e-115transcriptional regulatory protein84.25100.00EPH95667
AKFNOAOL_387284372649CspR3.56e-30cold shock protein84.6198.48AAO82613
AKFNOAOL_387284372646CspA5.46e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
AKFNOAOL_6119162845rep28930 / 93099.68CP003162
AKFNOAOL_5340305090repUS731061 / 110192.55CP002654
AKFNOAOL_92221848rep38630 / 90387.78CP005943

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
AKFNOAOL_110.01.00.0
AKFNOAOL_220.01.00.0
AKFNOAOL_330.01.00.0
AKFNOAOL_380.01.00.0
AKFNOAOL_390.01.00.0
AKFNOAOL_400.01.00.0
AKFNOAOL_410.01.00.0
AKFNOAOL_420.01.00.0
AKFNOAOL_430.01.00.0
AKFNOAOL_440.01.00.0
AKFNOAOL_450.01.00.0
AKFNOAOL_460.01.00.0
AKFNOAOL_470.01.00.0
AKFNOAOL_481.00.01.0
AKFNOAOL_490.01.00.0
AKFNOAOL_501.00.01.0
AKFNOAOL_511.00.01.0
AKFNOAOL_521.00.01.0
AKFNOAOL_531.00.01.0
AKFNOAOL_540.01.00.0
AKFNOAOL_550.01.00.0
AKFNOAOL_560.01.00.0
AKFNOAOL_570.01.00.0
AKFNOAOL_581.00.01.0
AKFNOAOL_591.00.01.0
AKFNOAOL_601.00.01.0
AKFNOAOL_611.00.01.0
AKFNOAOL_621.00.01.0
AKFNOAOL_630.01.00.0
AKFNOAOL_641.00.01.0
AKFNOAOL_650.01.00.0
AKFNOAOL_661.00.01.0
AKFNOAOL_670.01.00.0
AKFNOAOL_681.00.01.0
AKFNOAOL_691.00.01.0
AKFNOAOL_701.00.01.0
AKFNOAOL_710.01.00.0
AKFNOAOL_721.00.01.0
AKFNOAOL_731.00.01.0
AKFNOAOL_741.00.01.0
AKFNOAOL_751.00.01.0
AKFNOAOL_761.00.01.0
AKFNOAOL_770.01.00.0
AKFNOAOL_780.01.00.0
AKFNOAOL_791.00.01.0
AKFNOAOL_811.00.01.0
AKFNOAOL_821.00.01.0
AKFNOAOL_830.01.00.0
AKFNOAOL_841.00.01.0
AKFNOAOL_851.00.01.0
AKFNOAOL_861.00.01.0
AKFNOAOL_871.00.01.0
AKFNOAOL_881.00.01.0
AKFNOAOL_890.01.00.0
AKFNOAOL_901.00.01.0
AKFNOAOL_911.00.01.0
AKFNOAOL_921.00.01.0
AKFNOAOL_931.00.01.0
AKFNOAOL_941.00.01.0
AKFNOAOL_951.00.01.0
AKFNOAOL_961.00.01.0
AKFNOAOL_971.00.01.0
AKFNOAOL_981.00.01.0
AKFNOAOL_991.00.01.0
AKFNOAOL_1000.01.00.0
AKFNOAOL_1011.00.01.0
AKFNOAOL_1110.01.00.0
AKFNOAOL_1220.01.00.0
AKFNOAOL_1330.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
AKFNOAOL_4575370113100FalseSiphoviridaeVOG0181, VOG5073, VOG0685, VOG0283, VOG0226, VOG0514, VOG4566, VOG0189, VOG6005, VOG4567, VOG0044, VOG0044, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG0083, VOG6163, VOG4605, VOG4599, VOG8870, VOG10593, VOG8294, VOG1637, VOG0054
AKFNOAOL_67118279126515FalseSiphoviridaeVOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements