Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HNHEIFGG_134 | 2521 | 3225 | WalR | 7.50e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HNHEIFGG_33 | 88608 | 88414 | CspR | 4.25e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HNHEIFGG_33 | 88608 | 88411 | CspA | 6.53e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HNHEIFGG_93 | 6548 | 7483 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HNHEIFGG_87 | 380 | 1007 | rep38 | 630 / 903 | 88.57 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HNHEIFGG_11 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_22 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_33 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_44 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_55 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_63 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_64 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_65 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_66 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_67 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_68 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_69 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_70 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_71 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_72 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_73 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_74 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_75 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_76 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_77 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_78 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_79 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_80 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_81 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_82 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_83 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_84 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_85 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_86 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_87 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_88 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_89 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_90 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_91 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_92 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_93 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_94 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_95 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_96 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_98 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_99 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_100 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_101 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_102 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_103 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_104 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_105 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_106 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_107 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_108 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_109 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_110 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_111 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_112 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_113 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_114 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_115 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_116 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_117 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_118 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_119 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_120 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_121 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_122 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_123 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_124 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_125 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_126 | 1.0 | 0.0 | 1.0 |
| HNHEIFGG_134 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_145 | 0.0 | 1.0 | 0.0 |
| HNHEIFGG_156 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HNHEIFGG_72 | 14636 | 40705 | False | Siphoviridae | VOG0186, VOG4566, VOG4552, VOG4693, VOG0044, VOG0198, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG4994 |
Phigaro v2.4.0 (Database: Jan. 2024 release)