Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HFGPDADH_83 | 98029 | 98733 | WalR | 3.83e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HFGPDADH_65 | 65924 | 66118 | CspR | 9.26e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HFGPDADH_65 | 65924 | 66121 | CspA | 1.42e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HFGPDADH_43 | 1118 | 2053 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HFGPDADH_67 | 864 | 1820 | repUS64 | 960 / 954 | 89.79 | JN601038 |
| HFGPDADH_19 | 1787 | 2821 | rep38 | 1045 / 1104 | 83.25 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HFGPDADH_1 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_2 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_3 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_4 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_5 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_6 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_7 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_8 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_9 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_10 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_11 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_12 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_13 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_14 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_15 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_16 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_17 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_18 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_19 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_20 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_21 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_22 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_23 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_24 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_25 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_26 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_27 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_28 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_29 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_30 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_31 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_32 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_33 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_34 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_35 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_36 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_37 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_38 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_39 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_40 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_41 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_42 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_43 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_44 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_45 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_46 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_47 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_48 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_49 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_50 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_51 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_52 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_53 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_54 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_55 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_56 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_57 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_58 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_60 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_61 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_62 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_64 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_65 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_66 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_67 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_68 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_69 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_70 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_71 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_72 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_73 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_74 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_75 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_76 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_81 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_83 | 0.0 | 1.0 | 0.0 |
| HFGPDADH_88 | 1.0 | 0.0 | 1.0 |
| HFGPDADH_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HFGPDADH_11 | 152907 | 174099 | False | Siphoviridae | VOG8294, VOG4856, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG5616 |
| HFGPDADH_11 | 177833 | 202921 | False | Siphoviridae | VOG0189, VOG5046, VOG0186, VOG1309, VOG0181, VOG6495, VOG6495, VOG4602, VOG7508, VOG7508, VOG0985, VOG1788, VOG0275, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
| HFGPDADH_44 | 5811 | 29797 | False | Siphoviridae | VOG4693, VOG0586, VOG0044, VOG3643, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599 |
Phigaro v2.4.0 (Database: Jan. 2024 release)