Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHEOBMCG_1 | 723894 | 725813 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHEOBMCG_1 | 723894 | 725813 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHEOBMCG_1 | 723894 | 725810 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHEOBMCG_1 | 0.0 | 1.0 | 0.0 |
| CHEOBMCG_2 | 1.0 | 0.0 | 1.0 |
| CHEOBMCG_3 | 0.0 | 1.0 | 0.0 |
| CHEOBMCG_4 | 1.0 | 0.0 | 1.0 |
| CHEOBMCG_5 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHEOBMCG_1 | 140263 | 170317 | False | Siphoviridae | VOG5008, VOG4910, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG10904, VOG0796, VOG0198, VOG3307, VOG1183, VOG9500, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548 |
| CHEOBMCG_1 | 1612905 | 1629555 | False | Siphoviridae | VOG0275, VOG9667, VOG0650, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0198, VOG0204, VOG4714 |
| CHEOBMCG_1 | 1709479 | 1726189 | False | Siphoviridae | VOG0979, VOG0275, VOG10077, VOG4602, VOG8520, VOG8520, VOG8214, VOG6459, VOG9469, VOG0707, VOG3478, VOG5692, VOG0226, VOG0514, VOG4799, VOG1183, VOG2388, VOG4693 |
| CHEOBMCG_1 | 1751482 | 1781027 | False | Siphoviridae | VOG4645, VOG0866, VOG4841, VOG4581, VOG4544, VOG1345, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG4545, VOG0801, VOG3462, VOG10972, VOG4655, VOG9997, VOG4856, VOG9998, VOG1637 |
| CHEOBMCG_1 | 1946781 | 1950695 | False | Unknown | VOG8492, VOG9667, VOG3622, VOG11077 |
| CHEOBMCG_1 | 1951073 | 1982965 | False | Siphoviridae | VOG0275, VOG0195, VOG5280, VOG2246, VOG5317, VOG0686, VOG0198, VOG3691, VOG0866, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG0801, VOG3462, VOG4752, VOG8438, VOG4705, VOG0641 |
| CHEOBMCG_1 | 2116978 | 2146954 | False | Siphoviridae | VOG0979, VOG8294, VOG0641, VOG0648, VOG9888, VOG10608, VOG1335, VOG6163, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9331, VOG4972 |
| CHEOBMCG_1 | 2154330 | 2157736 | False | Siphoviridae | VOG4566, VOG8647, VOG0514, VOG0226, VOG0322 |
| CHEOBMCG_4 | 6477 | 15027 | False | Siphoviridae | VOG9674, VOG2876, VOG6495, VOG8904, VOG0275, VOG7442 |
Phigaro v2.4.0 (Database: Jan. 2024 release)