Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFDOHPGH_1 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_2 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_13 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_23 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_24 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_25 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_26 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_27 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_28 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_29 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_30 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_31 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_32 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_33 | 1.0 | 0.0 | 1.0 |
| LFDOHPGH_34 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_35 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_36 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_37 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_38 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_39 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_40 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_41 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_42 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_43 | 1.0 | 0.0 | 1.0 |
| LFDOHPGH_44 | 1.0 | 0.0 | 1.0 |
| LFDOHPGH_45 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_46 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_47 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_48 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_49 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_50 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_51 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_53 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_64 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_75 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_86 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_97 | 0.0 | 1.0 | 0.0 |
| LFDOHPGH_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFDOHPGH_1 | 241146 | 277380 | False | Siphoviridae | VOG10589, VOG4603, VOG7236, VOG6917, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG9034, VOG6951, VOG0198, VOG0796, VOG10227, VOG0691, VOG0692, VOG4555, VOG4572, VOG3438, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5793, VOG4605, VOG4599, VOG10972, VOG9997, VOG0565, VOG0861, VOG0703, VOG6335, VOG0866, VOG9998 |
| LFDOHPGH_108 | 20240 | 24313 | False | Myoviridae | VOG6085, VOG6396, VOG4410 |
Phigaro v2.4.0 (Database: Jan. 2024 release)