Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LGOHPPPG_62 | 13245 | 13890 | rep38 | 651 / 903 | 87.56 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGOHPPPG_1 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_2 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_13 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_21 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_22 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_23 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_24 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_25 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_26 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_27 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_28 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_29 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_30 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_31 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_32 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_33 | 1.0 | 0.0 | 1.0 |
| LGOHPPPG_34 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_35 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_36 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_37 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_38 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_39 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_40 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_41 | 1.0 | 0.0 | 1.0 |
| LGOHPPPG_51 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_62 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_73 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_84 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_95 | 0.0 | 1.0 | 0.0 |
| LGOHPPPG_106 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LGOHPPPG_73 | 20120 | 25292 | False | Myoviridae | VOG6085, VOG6396, VOG4410, VOG4927 |
Phigaro v2.4.0 (Database: Jan. 2024 release)