Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LLNJMLOO_1 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_2 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_3 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_4 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_5 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_6 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_7 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_8 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_9 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_10 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_11 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_12 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_13 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_14 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_23 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_34 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_45 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_56 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_67 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_78 | 0.0 | 1.0 | 0.0 |
| LLNJMLOO_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LLNJMLOO_12 | 272123 | 281190 | True | Myoviridae | VOG1026, VOG6282, VOG0322, VOG0189, VOG0583 |
| LLNJMLOO_45 | 83019 | 87092 | False | Myoviridae | VOG4927, VOG4410, VOG6396 |
| LLNJMLOO_67 | 26291 | 31245 | False | Myoviridae | VOG0384 |
Phigaro v2.4.0 (Database: Jan. 2024 release)