Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OLLNCCFL_55 | 41278 | 41475 | CspA | 8.91e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| OLLNCCFL_55 | 41278 | 41472 | CspR | 3.87e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OLLNCCFL_1 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_3 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_4 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_5 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_6 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_7 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_8 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_10 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_11 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_12 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_13 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_14 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_16 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_22 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_33 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_44 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_55 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_66 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_77 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_88 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_99 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_110 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_111 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_122 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_133 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_136 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_137 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_138 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_139 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_140 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_141 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_142 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_143 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_144 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_145 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_146 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_147 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_148 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_149 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_150 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_151 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_152 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_153 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_154 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_155 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_156 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_157 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_158 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_159 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_160 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_161 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_162 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_163 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_164 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_165 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_166 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_167 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_168 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_169 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_170 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_171 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_172 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_173 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_174 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_175 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_176 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_177 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_178 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_179 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_180 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_181 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_182 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_183 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_184 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_185 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_186 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_187 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_188 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_189 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_190 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_191 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_192 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_193 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_194 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_195 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_196 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_197 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_198 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_199 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_200 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_201 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_202 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_203 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_204 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_205 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_206 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_207 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_208 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_209 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_210 | 0.0 | 1.0 | 0.0 |
| OLLNCCFL_211 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_212 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_213 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_214 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_215 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_216 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_217 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_218 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_219 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_220 | 1.0 | 0.0 | 1.0 |
| OLLNCCFL_221 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OLLNCCFL_99 | 713 | 21168 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG6760, VOG4556, VOG4568, VOG0204, VOG0205, VOG4317, VOG0207, VOG4586, VOG0209, VOG6163, VOG0801, VOG3462, VOG10223, VOG5361, VOG5361, VOG4856, VOG4334 |
| OLLNCCFL_177 | 45842 | 53881 | False | Siphoviridae | VOG0275, VOG4585, VOG1159, VOG4677 |
Phigaro v2.4.0 (Database: Jan. 2024 release)