Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HGPBDCOH_237 | 103621 | 102917 | WalR | 1.84e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HGPBDCOH_64 | 13045 | 13242 | CspR | 4.11e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HGPBDCOH_11 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_22 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_33 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_44 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_54 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_64 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_74 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_84 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_94 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_104 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_105 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_114 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_120 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_130 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_141 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_152 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_163 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_174 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_179 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_180 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_181 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_182 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_183 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_184 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_185 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_186 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_187 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_188 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_189 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_190 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_191 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_192 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_193 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_194 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_195 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_196 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_197 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_198 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_199 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_200 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_201 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_202 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_203 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_204 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_205 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_206 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_207 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_208 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_209 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_210 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_211 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_212 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_214 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_215 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_216 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_217 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_218 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_219 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_220 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_221 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_222 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_223 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_224 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_225 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_226 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_227 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_228 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_229 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_230 | 1.0 | 0.0 | 1.0 |
| HGPBDCOH_237 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_248 | 0.0 | 1.0 | 0.0 |
| HGPBDCOH_258 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HGPBDCOH_11 | 4039 | 40322 | False | Siphoviridae | VOG6463, VOG4552, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG0322, VOG0226, VOG4566, VOG0189, VOG9860, VOG0536, VOG3643, VOG0044, VOG0198, VOG7136, VOG4570, VOG10904, VOG4549, VOG1345, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918 |
| HGPBDCOH_185 | 5580 | 14877 | False | Siphoviridae | VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205, VOG4606, VOG4632, VOG1581 |
Phigaro v2.4.0 (Database: Jan. 2024 release)