Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DEEPHLEE_167 | 9052 | 8351 | WalR | 8.79e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DEEPHLEE_179 | 4608 | 5675 | repUS73 | 1068 / 1101 | 97.00 | CP002654 |
| DEEPHLEE_138 | 1 | 1040 | rep38 | 1042 / 1104 | 88.58 | CP002655 |
| DEEPHLEE_21 | 30 | 954 | repUS64 | 930 / 954 | 85.38 | JN601038 |
| DEEPHLEE_140 | 1 | 936 | rep28 | 937 / 936 | 81.96 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DEEPHLEE_1 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_2 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_3 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_4 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_5 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_6 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_7 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_8 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_9 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_10 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_12 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_13 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_14 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_15 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_16 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_17 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_18 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_19 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_20 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_21 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_22 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_23 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_24 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_25 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_26 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_27 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_28 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_29 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_30 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_31 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_32 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_34 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_35 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_36 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_37 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_38 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_39 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_40 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_41 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_42 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_43 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_44 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_45 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_46 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_47 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_48 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_49 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_57 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_68 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_79 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_90 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_101 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_112 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_113 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_114 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_115 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_116 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_117 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_118 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_119 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_120 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_121 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_122 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_123 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_124 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_125 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_126 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_127 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_128 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_129 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_130 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_131 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_132 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_133 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_134 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_135 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_136 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_137 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_138 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_139 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_140 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_141 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_142 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_143 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_144 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_145 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_146 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_147 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_148 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_149 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_150 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_151 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_152 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_153 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_154 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_155 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_156 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_157 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_158 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_159 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_160 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_161 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_162 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_163 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_164 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_165 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_166 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_167 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_168 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_169 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_170 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_171 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_172 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_173 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_174 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_175 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_176 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_177 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_178 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_179 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_180 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_181 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_182 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_183 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_184 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_185 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_186 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_187 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_188 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_189 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_190 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_191 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_192 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_193 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_194 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_195 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_196 | 0.0 | 1.0 | 0.0 |
| DEEPHLEE_197 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_198 | 1.0 | 0.0 | 1.0 |
| DEEPHLEE_199 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DEEPHLEE_1 | 113423 | 125455 | False | Siphoviridae | VOG0480, VOG0198, VOG0204, VOG4553, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
| DEEPHLEE_68 | 2902 | 34967 | False | Myoviridae | VOG0703, VOG4705, VOG4783, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG4910, VOG1026, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG0149, VOG0044, VOG6515, VOG4567, VOG0052, VOG0189, VOG8647, VOG0514, VOG0226 |
| DEEPHLEE_114 | 2888 | 15087 | False | Siphoviridae | VOG0573, VOG0044, VOG6005, VOG4693, VOG7236, VOG0186, VOG1309, VOG0650, VOG5353, VOG0787, VOG5616, VOG0707, VOG9667, VOG6495, VOG4602, VOG6914 |
Phigaro v2.4.0 (Database: Jan. 2024 release)