Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OMMFCCCD_157 | 55615 | 56316 | WalR | 8.79e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OMMFCCCD_154 | 5309 | 6244 | rep28 | 936 / 936 | 99.89 | CP005948 |
| OMMFCCCD_120 | 12931 | 13970 | rep38 | 1042 / 1104 | 88.58 | CP002655 |
| OMMFCCCD_23 | 30 | 954 | repUS64 | 930 / 954 | 85.48 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMMFCCCD_1 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_2 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_3 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_4 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_5 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_6 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_7 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_8 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_9 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_10 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_11 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_12 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_13 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_15 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_16 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_17 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_18 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_19 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_20 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_21 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_22 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_23 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_24 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_25 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_26 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_27 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_28 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_29 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_30 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_31 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_32 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_33 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_35 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_36 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_37 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_38 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_39 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_40 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_41 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_42 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_43 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_44 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_45 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_46 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_47 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_48 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_49 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_50 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_57 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_68 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_79 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_89 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_90 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_91 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_92 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_93 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_94 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_95 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_96 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_97 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_98 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_99 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_100 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_101 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_102 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_103 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_104 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_105 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_106 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_107 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_108 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_109 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_110 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_111 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_112 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_113 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_114 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_115 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_116 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_117 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_118 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_119 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_120 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_121 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_122 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_123 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_124 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_125 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_126 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_127 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_128 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_129 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_130 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_131 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_132 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_133 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_134 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_135 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_136 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_137 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_138 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_139 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_140 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_141 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_142 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_143 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_144 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_145 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_146 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_147 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_148 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_149 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_150 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_151 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_152 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_153 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_154 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_155 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_156 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_157 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_158 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_159 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_160 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_161 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_162 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_163 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_164 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_165 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_166 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_167 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_168 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_169 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_170 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_171 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_172 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_173 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_174 | 0.0 | 1.0 | 0.0 |
| OMMFCCCD_175 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_176 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_177 | 1.0 | 0.0 | 1.0 |
| OMMFCCCD_178 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMMFCCCD_1 | 15931 | 27963 | False | Siphoviridae | VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4553, VOG0204, VOG0198 |
| OMMFCCCD_89 | 2452 | 38451 | True | Myoviridae | VOG0703, VOG4705, VOG4880, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1026, VOG4357, VOG1433, VOG4910, VOG1026, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG0149, VOG3643, VOG0044, VOG4567, VOG0052, VOG0189, VOG8647, VOG0514, VOG0226, VOG0283, VOG0321, VOG3537 |
| OMMFCCCD_94 | 24839 | 36971 | False | Siphoviridae | VOG3685, VOG6914, VOG4602, VOG6495, VOG9667, VOG0707, VOG5616, VOG0787, VOG5353, VOG0650, VOG1309, VOG0186, VOG7236, VOG4693, VOG6005, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)