Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MEPAFCOE_127 | 55615 | 56316 | WalR | 8.79e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MEPAFCOE_107 | 5632 | 6353 | rep38 | 722 / 903 | 99.45 | CP005943 |
| MEPAFCOE_136 | 5373 | 6308 | rep28 | 936 / 936 | 97.97 | CP005948 |
| MEPAFCOE_26 | 186 | 684 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MEPAFCOE_1 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_2 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_3 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_4 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_5 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_6 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_7 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_8 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_9 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_11 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_12 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_13 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_14 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_15 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_16 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_17 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_18 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_19 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_20 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_21 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_22 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_23 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_24 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_25 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_26 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_27 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_29 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_30 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_31 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_32 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_33 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_34 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_35 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_36 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_37 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_38 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_39 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_40 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_41 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_42 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_43 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_46 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_57 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_68 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_69 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_70 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_71 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_72 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_73 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_74 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_75 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_76 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_77 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_78 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_79 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_80 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_81 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_82 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_83 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_84 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_85 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_86 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_87 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_88 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_89 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_90 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_91 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_92 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_93 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_94 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_95 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_96 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_97 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_98 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_99 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_100 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_101 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_102 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_103 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_104 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_105 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_106 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_107 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_108 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_109 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_110 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_111 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_112 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_113 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_114 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_115 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_116 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_117 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_118 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_119 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_120 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_121 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_122 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_123 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_124 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_125 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_126 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_127 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_128 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_129 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_130 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_131 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_132 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_133 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_134 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_135 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_136 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_137 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_138 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_139 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_140 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_141 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_142 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_143 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_144 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_145 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_146 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_147 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_148 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_149 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_150 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_151 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_152 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_153 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_154 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_155 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_156 | 1.0 | 0.0 | 1.0 |
| MEPAFCOE_157 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_158 | 0.0 | 1.0 | 0.0 |
| MEPAFCOE_159 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MEPAFCOE_1 | 113423 | 125455 | False | Siphoviridae | VOG0480, VOG0198, VOG0204, VOG4553, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205 |
| MEPAFCOE_68 | 8609 | 41192 | False | Myoviridae | VOG0321, VOG0283, VOG0226, VOG0514, VOG8647, VOG0189, VOG0189, VOG0052, VOG4567, VOG6515, VOG0044, VOG6414, VOG0149, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG1026, VOG4910, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG4783, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)