Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IJNPLMNE_129 | 55615 | 56316 | WalR | 8.79e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IJNPLMNE_108 | 5632 | 6353 | rep38 | 722 / 903 | 99.45 | CP005943 |
| IJNPLMNE_136 | 5373 | 6308 | rep28 | 936 / 936 | 97.97 | CP005948 |
| IJNPLMNE_22 | 186 | 684 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IJNPLMNE_1 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_2 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_3 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_4 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_5 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_6 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_8 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_9 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_10 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_11 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_12 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_13 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_14 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_15 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_16 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_17 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_18 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_19 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_20 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_21 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_22 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_23 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_24 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_25 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_27 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_28 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_29 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_30 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_31 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_32 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_33 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_34 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_35 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_36 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_37 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_38 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_39 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_40 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_41 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_46 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_57 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_68 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_71 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_72 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_73 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_74 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_75 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_76 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_77 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_78 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_79 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_80 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_81 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_82 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_83 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_84 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_85 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_86 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_87 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_88 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_89 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_90 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_91 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_92 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_93 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_94 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_95 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_96 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_97 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_98 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_99 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_100 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_101 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_102 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_103 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_104 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_105 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_106 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_107 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_108 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_109 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_110 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_111 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_112 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_113 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_114 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_115 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_116 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_117 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_118 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_119 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_120 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_121 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_122 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_123 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_124 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_125 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_126 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_127 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_128 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_129 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_130 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_131 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_132 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_133 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_134 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_135 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_136 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_137 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_138 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_139 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_140 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_141 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_142 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_143 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_144 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_145 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_146 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_147 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_148 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_149 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_150 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_151 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_152 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_153 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_154 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_155 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_156 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_157 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_158 | 0.0 | 1.0 | 0.0 |
| IJNPLMNE_159 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_160 | 1.0 | 0.0 | 1.0 |
| IJNPLMNE_161 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IJNPLMNE_1 | 15931 | 27963 | False | Siphoviridae | VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4553, VOG0204, VOG0198 |
| IJNPLMNE_68 | 2902 | 35485 | False | Myoviridae | VOG0703, VOG4705, VOG4783, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG4910, VOG1026, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG0149, VOG0044, VOG6515, VOG4567, VOG0052, VOG0189, VOG0189, VOG8647, VOG0514, VOG0226, VOG0283 |
| IJNPLMNE_76 | 24839 | 37038 | False | Siphoviridae | VOG3685, VOG6914, VOG4602, VOG6495, VOG9667, VOG0707, VOG5616, VOG0787, VOG5353, VOG0650, VOG1309, VOG0186, VOG7236, VOG4693, VOG6005, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)