Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CIGNPGHA_145 | 9052 | 8351 | WalR | 8.79e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CIGNPGHA_119 | 12667 | 13706 | rep38 | 1042 / 1104 | 88.58 | CP002655 |
| CIGNPGHA_25 | 30 | 954 | repUS64 | 930 / 954 | 85.48 | JN601038 |
| CIGNPGHA_150 | 1 | 936 | rep28 | 937 / 936 | 81.64 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIGNPGHA_1 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_2 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_3 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_4 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_5 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_6 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_7 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_8 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_9 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_10 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_11 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_12 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_13 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_14 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_16 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_17 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_18 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_19 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_20 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_21 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_22 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_23 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_24 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_25 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_26 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_27 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_28 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_29 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_30 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_31 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_32 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_33 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_35 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_36 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_37 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_38 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_39 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_40 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_41 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_42 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_43 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_44 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_45 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_46 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_47 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_48 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_49 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_50 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_51 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_52 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_57 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_68 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_79 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_88 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_89 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_90 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_91 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_92 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_93 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_94 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_95 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_96 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_97 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_98 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_99 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_100 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_101 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_102 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_103 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_104 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_105 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_106 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_107 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_108 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_109 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_110 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_111 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_112 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_113 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_114 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_115 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_116 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_117 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_118 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_119 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_120 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_121 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_122 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_123 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_124 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_125 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_126 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_127 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_128 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_129 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_130 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_131 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_132 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_133 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_134 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_135 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_136 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_137 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_138 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_139 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_140 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_141 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_142 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_143 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_144 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_145 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_146 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_147 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_148 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_149 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_150 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_151 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_152 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_153 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_154 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_155 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_156 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_157 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_158 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_159 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_160 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_161 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_162 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_163 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_164 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_165 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_166 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_167 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_168 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_169 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_170 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_171 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_172 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_173 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_174 | 1.0 | 0.0 | 1.0 |
| CIGNPGHA_175 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_176 | 0.0 | 1.0 | 0.0 |
| CIGNPGHA_177 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIGNPGHA_91 | 24839 | 37369 | False | Siphoviridae | VOG3685, VOG6914, VOG4602, VOG6495, VOG9667, VOG0707, VOG5616, VOG0787, VOG5353, VOG0650, VOG1309, VOG0186, VOG7236, VOG4693, VOG6005, VOG0044, VOG0573 |
Phigaro v2.4.0 (Database: Jan. 2024 release)