Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNHCPIJN_102 | 32925 | 34898 | tet(Q) | ARO:3000191 | tet(Q) | 97.11 | 100.00 | Z21523.1 |
| JNHCPIJN_127 | 8235 | 9200 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JNHCPIJN_102 | 32925 | 34850 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| JNHCPIJN_127 | 8235 | 9200 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| JNHCPIJN_127 | 8235 | 9200 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| JNHCPIJN_127 | 8235 | 9200 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| JNHCPIJN_127 | 8235 | 9200 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNHCPIJN_127 | 8238 | 9200 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| JNHCPIJN_102 | 32928 | 34850 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JNHCPIJN_1 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_2 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_3 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_4 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_5 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_6 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_7 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_8 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_9 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_10 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_11 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_12 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_13 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_14 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_15 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_16 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_17 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_18 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_19 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_20 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_22 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_24 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_35 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_46 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_57 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_60 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_61 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_62 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_63 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_64 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_65 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_66 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_67 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_68 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_69 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_70 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_71 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_72 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_73 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_74 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_75 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_76 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_77 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_78 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_79 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_80 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_81 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_82 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_83 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_84 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_85 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_86 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_87 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_88 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_89 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_90 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_91 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_92 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_93 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_94 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_95 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_96 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_97 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_98 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_99 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_100 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_101 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_102 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_103 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_104 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_105 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_106 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_107 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_108 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_109 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_110 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_111 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_112 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_113 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_114 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_115 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_116 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_117 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_118 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_119 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_120 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_121 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_122 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_123 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_124 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_125 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_126 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_127 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_128 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_129 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_130 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_131 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_132 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_133 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_135 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_136 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_137 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_138 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_139 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_140 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_141 | 0.0 | 1.0 | 0.0 |
| JNHCPIJN_142 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_143 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_144 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_145 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_146 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_147 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_148 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_149 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_150 | 1.0 | 0.0 | 1.0 |
| JNHCPIJN_151 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JNHCPIJN_60 | 61240 | 76042 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)