Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKCGLPNJ_1 | 316422 | 317387 | CfxA4 | ARO:3003005 | CfxA4 | 99.69 | 100.00 | AY769933.1 |
| PKCGLPNJ_22 | 170240 | 172165 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PKCGLPNJ_55 | 10188 | 10925 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| PKCGLPNJ_55 | 7385 | 8122 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKCGLPNJ_1 | 316422 | 317387 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| PKCGLPNJ_22 | 170240 | 172165 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| PKCGLPNJ_55 | 10188 | 10925 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKCGLPNJ_1 | 316425 | 317387 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 99.69 | 100.00 | WP_057280848.1 |
| PKCGLPNJ_22 | 170240 | 172162 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PKCGLPNJ_55 | 10188 | 10922 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| PKCGLPNJ_55 | 7385 | 8119 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKCGLPNJ_17 | 7859 | 6279 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKCGLPNJ_1 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_2 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_13 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_14 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_15 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_16 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_17 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_18 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_19 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_20 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_21 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_22 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_23 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_24 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_25 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_26 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_27 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_28 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_29 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_30 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_31 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_32 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_33 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_34 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_35 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_36 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_37 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_38 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_39 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_40 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_41 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_42 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_43 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_44 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_45 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_46 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_47 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_48 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_49 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_50 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_51 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_52 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_53 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_54 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_55 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_56 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_57 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_58 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_59 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_60 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_61 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_62 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_63 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_64 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_65 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_66 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_67 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_68 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_69 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_71 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_72 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_73 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_74 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_75 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_76 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_77 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_78 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_79 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_80 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_81 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_82 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_83 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_84 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_85 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_86 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_87 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_88 | 0.0 | 1.0 | 0.0 |
| PKCGLPNJ_89 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_90 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_91 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_92 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_93 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_94 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_95 | 1.0 | 0.0 | 1.0 |
| PKCGLPNJ_99 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKCGLPNJ_30 | 12158 | 13521 | False | Unknown | VOG9667, |
| PKCGLPNJ_45 | 9471 | 17505 | True | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)