Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMNFKPEP_57 | 116217 | 117182 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| IMNFKPEP_167 | 11914 | 13839 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 97.56 | Z21523.1 |
| IMNFKPEP_171 | 9925 | 11064 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| IMNFKPEP_171 | 8590 | 9756 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 100.00 | M37699.1 |
| IMNFKPEP_171 | 7551 | 8414 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| IMNFKPEP_203 | 1834 | 2634 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IMNFKPEP_57 | 116217 | 117182 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| IMNFKPEP_57 | 116217 | 117182 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| IMNFKPEP_57 | 116217 | 117182 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| IMNFKPEP_57 | 116217 | 117182 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| IMNFKPEP_203 | 1834 | 2634 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| IMNFKPEP_171 | 8590 | 9756 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| IMNFKPEP_167 | 11914 | 13839 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IMNFKPEP_171 | 7554 | 8414 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| IMNFKPEP_57 | 116217 | 117179 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| IMNFKPEP_171 | 8593 | 9756 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| IMNFKPEP_171 | 9928 | 11064 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| IMNFKPEP_203 | 1837 | 2634 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| IMNFKPEP_167 | 11917 | 13839 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.38 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IMNFKPEP_135 | 24146 | 22566 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.45 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IMNFKPEP_202 | 1 | 644 | repUS2 | 646 / 681 | 98.76 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IMNFKPEP_1 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_2 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_3 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_4 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_5 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_6 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_7 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_8 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_9 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_10 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_11 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_13 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_24 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_35 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_46 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_57 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_68 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_79 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_90 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_101 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_112 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_113 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_124 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_131 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_132 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_133 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_134 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_135 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_136 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_137 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_138 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_139 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_140 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_141 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_142 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_143 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_144 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_145 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_146 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_147 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_148 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_149 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_150 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_151 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_152 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_153 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_154 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_155 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_156 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_157 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_158 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_159 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_160 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_161 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_162 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_163 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_164 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_165 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_166 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_167 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_168 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_169 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_170 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_171 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_172 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_173 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_174 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_175 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_176 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_177 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_178 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_179 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_180 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_181 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_182 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_183 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_184 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_185 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_186 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_188 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_189 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_190 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_191 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_192 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_193 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_194 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_195 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_196 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_197 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_198 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_199 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_200 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_201 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_202 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_203 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_204 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_205 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_206 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_207 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_208 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_209 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_210 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_211 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_212 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_213 | 1.0 | 0.0 | 1.0 |
| IMNFKPEP_214 | 0.0 | 1.0 | 0.0 |
| IMNFKPEP_215 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IMNFKPEP_153 | 22707 | 30592 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)