Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGKFOCGJ_114 | 872 | 1837 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| DGKFOCGJ_5 | 270 | 1436 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| DGKFOCGJ_108 | 2 | 1633 | tet(Q) | ARO:3000191 | tet(Q) | 95.76 | 82.65 | Z21523.1 |
| DGKFOCGJ_4 | 2 | 1633 | tet(Q) | ARO:3000191 | tet(Q) | 88.58 | 82.65 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DGKFOCGJ_5 | 270 | 1436 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| DGKFOCGJ_114 | 872 | 1837 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| DGKFOCGJ_114 | 872 | 1837 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| DGKFOCGJ_114 | 872 | 1837 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DGKFOCGJ_114 | 872 | 1837 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| DGKFOCGJ_28 | 1 | 744 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.87 | 92.88 | M17808 |
| DGKFOCGJ_108 | 1 | 1633 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.82 | 84.79 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DGKFOCGJ_114 | 872 | 1834 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| DGKFOCGJ_28 | 1 | 744 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 100.00 | 93.23 | WP_002682030.1 |
| DGKFOCGJ_5 | 273 | 1436 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| DGKFOCGJ_108 | 2 | 1630 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.45 | 84.71 | WP_063856407.1 |
| DGKFOCGJ_4 | 2 | 1630 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 89.13 | 84.71 | WP_063856407.1 |
| DGKFOCGJ_117 | 8393 | 9346 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DGKFOCGJ_84 | 46755 | 45175 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DGKFOCGJ_146 | 2096 | 2676 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DGKFOCGJ_1 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_2 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_3 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_4 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_5 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_6 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_7 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_8 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_9 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_10 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_11 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_12 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_13 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_14 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_15 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_16 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_17 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_24 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_35 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_46 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_57 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_64 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_65 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_66 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_67 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_68 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_69 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_70 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_71 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_72 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_73 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_74 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_75 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_76 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_77 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_78 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_79 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_80 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_81 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_82 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_83 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_84 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_85 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_86 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_87 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_88 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_89 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_90 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_91 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_92 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_93 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_94 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_95 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_96 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_97 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_98 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_99 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_100 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_101 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_102 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_103 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_104 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_105 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_106 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_107 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_108 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_109 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_110 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_111 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_112 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_113 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_114 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_115 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_116 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_117 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_118 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_119 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_120 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_121 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_122 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_123 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_124 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_125 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_126 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_127 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_128 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_130 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_131 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_132 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_133 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_134 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_135 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_136 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_137 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_138 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_139 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_140 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_141 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_142 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_143 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_144 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_145 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_146 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_147 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_148 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_149 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_150 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_151 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_152 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_153 | 0.0 | 1.0 | 0.0 |
| DGKFOCGJ_154 | 1.0 | 0.0 | 1.0 |
| DGKFOCGJ_155 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DGKFOCGJ_84 | 4146 | 12962 | False | Unknown | VOG2165, |
| DGKFOCGJ_89 | 31301 | 34314 | False | Unknown | VOG6183, |
Phigaro v2.4.0 (Database: Jan. 2024 release)