Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPJFCJKB_6 | 110975 | 112900 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IPJFCJKB_6 | 110975 | 112900 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPJFCJKB_13 | 26139 | 27044 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| IPJFCJKB_6 | 110975 | 112897 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IPJFCJKB_6 | 56721 | 55141 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IPJFCJKB_36 | 1 | 644 | repUS2 | 646 / 681 | 98.76 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IPJFCJKB_1 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_2 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_3 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_4 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_5 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_6 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_7 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_8 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_9 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_10 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_11 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_12 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_13 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_14 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_15 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_16 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_17 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_18 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_19 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_20 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_21 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_22 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_23 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_24 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_25 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_26 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_27 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_28 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_29 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_30 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_31 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_32 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_33 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_34 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_35 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_36 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_37 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_38 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_39 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_42 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_43 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_44 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_45 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_46 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_47 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_48 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_49 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_50 | 1.0 | 0.0 | 1.0 |
| IPJFCJKB_56 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_67 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_78 | 0.0 | 1.0 | 0.0 |
| IPJFCJKB_87 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IPJFCJKB_2 | 41972 | 52005 | True | Siphoviridae | VOG2703, |
Phigaro v2.4.0 (Database: Jan. 2024 release)