Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOJAPDAE_124 | 54527 | 55492 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| JOJAPDAE_142 | 211 | 948 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JOJAPDAE_124 | 54527 | 55492 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| JOJAPDAE_142 | 211 | 948 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
| JOJAPDAE_193 | 1226 | 2176 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| JOJAPDAE_193 | 1226 | 2176 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| JOJAPDAE_193 | 1226 | 2176 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JOJAPDAE_124 | 54530 | 55492 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| JOJAPDAE_142 | 211 | 945 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| JOJAPDAE_193 | 1224 | 2177 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JOJAPDAE_200 | 79919 | 81499 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JOJAPDAE_1 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_2 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_3 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_4 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_5 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_6 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_7 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_8 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_9 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_10 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_11 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_12 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_13 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_14 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_15 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_16 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_17 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_18 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_19 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_20 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_21 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_22 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_23 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_24 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_25 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_35 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_46 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_57 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_68 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_79 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_90 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_101 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_112 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_113 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_124 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_126 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_127 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_128 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_129 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_130 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_131 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_132 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_133 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_134 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_135 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_136 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_137 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_138 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_139 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_140 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_141 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_142 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_143 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_144 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_145 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_146 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_147 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_148 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_149 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_150 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_151 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_152 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_153 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_154 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_155 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_156 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_157 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_158 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_159 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_160 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_161 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_162 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_163 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_164 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_165 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_166 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_167 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_168 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_169 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_170 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_171 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_172 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_173 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_174 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_175 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_176 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_177 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_178 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_179 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_180 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_181 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_182 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_183 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_184 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_185 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_186 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_187 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_188 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_189 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_191 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_192 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_193 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_194 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_195 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_196 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_197 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_198 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_199 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_200 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_201 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_202 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_203 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_204 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_205 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_206 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_207 | 0.0 | 1.0 | 0.0 |
| JOJAPDAE_208 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_209 | 1.0 | 0.0 | 1.0 |
| JOJAPDAE_210 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JOJAPDAE_136 | 34061 | 48313 | False | Unknown | VOG3992, |
| JOJAPDAE_144 | 15200 | 24856 | False | Siphoviridae | VOG4751, |
Phigaro v2.4.0 (Database: Jan. 2024 release)