Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AOPGDALD_2 | 40118 | 42043 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| AOPGDALD_108 | 8233 | 9198 | CfxA2 | ARO:3003002 | CfxA2 | 99.07 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AOPGDALD_2 | 40118 | 42043 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| AOPGDALD_108 | 8233 | 9198 | cfxA3 | Ampicillin | 99.59 | 100.00 | AF472622 |
| AOPGDALD_108 | 8233 | 9198 | cfxA4 | Unknown Beta-lactam | 99.59 | 100.00 | AY769933 |
| AOPGDALD_108 | 8233 | 9198 | cfxA5 | Unknown Beta-lactam | 99.59 | 100.00 | AY769934 |
| AOPGDALD_108 | 8233 | 9198 | cfxA | Cefoxitin, Ampicillin | 99.59 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AOPGDALD_2 | 40118 | 42040 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| AOPGDALD_108 | 8236 | 9198 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.07 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AOPGDALD_1 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_2 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_13 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_24 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_35 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_46 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_53 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_54 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_55 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_56 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_57 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_58 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_59 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_60 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_61 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_62 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_63 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_64 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_65 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_66 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_67 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_68 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_69 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_70 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_71 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_72 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_73 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_74 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_75 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_76 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_77 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_78 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_79 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_80 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_81 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_82 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_83 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_84 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_85 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_86 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_87 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_88 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_89 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_90 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_91 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_92 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_93 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_94 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_95 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_96 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_97 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_98 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_99 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_100 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_101 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_102 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_103 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_104 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_105 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_106 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_107 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_108 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_109 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_110 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_111 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_112 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_113 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_115 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_116 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_117 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_118 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_119 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_120 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_121 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_122 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_123 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_124 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_125 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_126 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_127 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_128 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_129 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_130 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_131 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_132 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_133 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_134 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_135 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_136 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_137 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_138 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_139 | 0.0 | 1.0 | 0.0 |
| AOPGDALD_140 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_141 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_142 | 1.0 | 0.0 | 1.0 |
| AOPGDALD_144 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AOPGDALD_65 | 60593 | 69536 | False | Siphoviridae | VOG7238, |
| AOPGDALD_91 | 54715 | 67913 | False | Siphoviridae | VOG4690, |
| AOPGDALD_102 | 65967 | 84648 | False | Myoviridae | VOG6733, |
Phigaro v2.4.0 (Database: Jan. 2024 release)