Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCCDCJJA_75 | 42045 | 43970 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CCCDCJJA_75 | 42045 | 43970 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| CCCDCJJA_66 | 37458 | 38408 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| CCCDCJJA_66 | 37458 | 38408 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| CCCDCJJA_66 | 37458 | 38408 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| CCCDCJJA_66 | 37458 | 38408 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CCCDCJJA_75 | 42048 | 43970 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CCCDCJJA_66 | 37456 | 38409 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CCCDCJJA_1 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_2 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_3 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_13 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_24 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_35 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_46 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_50 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_51 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_52 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_53 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_54 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_55 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_56 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_57 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_58 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_59 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_60 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_61 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_62 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_63 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_64 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_65 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_66 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_67 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_68 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_69 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_70 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_71 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_72 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_73 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_74 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_75 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_76 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_77 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_78 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_79 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_80 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_81 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_82 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_83 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_84 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_85 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_86 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_87 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_88 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_89 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_90 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_91 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_92 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_93 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_94 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_95 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_96 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_97 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_98 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_99 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_100 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_101 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_102 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_103 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_104 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_105 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_106 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_107 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_108 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_109 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_110 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_111 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_112 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_113 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_114 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_115 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_116 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_118 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_119 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_120 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_121 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_122 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_123 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_124 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_126 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_127 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_128 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_129 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_130 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_131 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_132 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_133 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_134 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_135 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_136 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_137 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_138 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_139 | 1.0 | 0.0 | 1.0 |
| CCCDCJJA_140 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_141 | 0.0 | 1.0 | 0.0 |
| CCCDCJJA_142 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CCCDCJJA_60 | 22870 | 31813 | False | Siphoviridae | VOG4841, |
Phigaro v2.4.0 (Database: Jan. 2024 release)