Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IDFICMBH_32 | 3287 | 5212 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IDFICMBH_32 | 3287 | 5212 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| IDFICMBH_42 | 37458 | 38408 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| IDFICMBH_42 | 37458 | 38408 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| IDFICMBH_42 | 37458 | 38408 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| IDFICMBH_42 | 37458 | 38408 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IDFICMBH_32 | 3287 | 5209 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| IDFICMBH_42 | 37456 | 38409 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IDFICMBH_1 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_2 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_13 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_23 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_24 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_25 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_26 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_27 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_28 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_29 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_30 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_31 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_32 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_33 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_34 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_35 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_36 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_37 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_38 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_39 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_40 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_41 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_42 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_43 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_44 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_45 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_46 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_47 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_48 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_49 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_50 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_51 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_52 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_53 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_54 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_55 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_56 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_57 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_58 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_59 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_60 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_61 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_62 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_63 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_64 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_65 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_66 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_67 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_68 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_69 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_70 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_71 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_72 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_73 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_74 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_75 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_76 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_77 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_78 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_79 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_80 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_81 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_82 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_83 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_85 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_86 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_87 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_88 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_89 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_90 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_92 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_93 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_94 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_95 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_96 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_97 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_98 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_99 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_100 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_101 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_102 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_103 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_104 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_105 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_106 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_107 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_108 | 0.0 | 1.0 | 0.0 |
| IDFICMBH_109 | 1.0 | 0.0 | 1.0 |
| IDFICMBH_110 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IDFICMBH_37 | 80725 | 93245 | False | Siphoviridae | VOG8171, |
| IDFICMBH_44 | 30248 | 33531 | True | Unknown | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)