Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOKEMPBB_11 | 97492 | 98697 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| HOKEMPBB_19 | 95153 | 96118 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| HOKEMPBB_10 | 56159 | 56893 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HOKEMPBB_19 | 95153 | 96118 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| HOKEMPBB_10 | 56159 | 56893 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| HOKEMPBB_10 | 57665 | 59128 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| HOKEMPBB_10 | 59254 | 60468 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOKEMPBB_19 | 95156 | 96118 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| HOKEMPBB_11 | 98722 | 99231 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| HOKEMPBB_10 | 56162 | 56893 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| HOKEMPBB_11 | 97492 | 98694 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| HOKEMPBB_10 | 57668 | 59128 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| HOKEMPBB_10 | 59245 | 60468 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOKEMPBB_1 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_2 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_3 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_4 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_5 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_6 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_7 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_8 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_9 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_10 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_11 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_12 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_13 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_14 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_15 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_16 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_17 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_18 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_19 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_20 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_21 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_22 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_23 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_24 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_25 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_26 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_27 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_28 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_29 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_30 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_31 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_32 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_33 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_34 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_35 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_36 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_37 | 1.0 | 0.0 | 1.0 |
| HOKEMPBB_38 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_40 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_41 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_42 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_43 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_44 | 1.0 | 0.0 | 1.0 |
| HOKEMPBB_45 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_46 | 1.0 | 0.0 | 1.0 |
| HOKEMPBB_47 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_48 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_49 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_50 | 1.0 | 0.0 | 1.0 |
| HOKEMPBB_51 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_52 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_53 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_54 | 1.0 | 0.0 | 1.0 |
| HOKEMPBB_56 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_67 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_78 | 0.0 | 1.0 | 0.0 |
| HOKEMPBB_81 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HOKEMPBB_5 | 150231 | 158754 | False | Unknown | VOG7407, |
| HOKEMPBB_45 | 244856 | 251412 | False | Unknown | VOG0292, |
Phigaro v2.4.0 (Database: Jan. 2024 release)