Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EKFECMEK_97 | 72254 | 72988 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| EKFECMEK_27 | 31700 | 32665 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| EKFECMEK_28 | 26230 | 28155 | tet(Q) | ARO:3000191 | tet(Q) | 96.26 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EKFECMEK_27 | 31700 | 32665 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| EKFECMEK_27 | 31700 | 32665 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| EKFECMEK_27 | 31700 | 32665 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| EKFECMEK_27 | 31700 | 32665 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| EKFECMEK_28 | 26230 | 28155 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | L33696 |
| EKFECMEK_97 | 72254 | 72988 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| EKFECMEK_97 | 73760 | 75223 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| EKFECMEK_97 | 75349 | 76563 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EKFECMEK_27 | 31700 | 32662 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| EKFECMEK_97 | 72257 | 72988 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| EKFECMEK_28 | 26233 | 28155 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.38 | 100.00 | WP_063856407.1 |
| EKFECMEK_97 | 73763 | 75223 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| EKFECMEK_97 | 75340 | 76563 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EKFECMEK_1 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_2 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_11 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_12 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_13 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_14 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_15 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_16 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_17 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_18 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_19 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_20 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_21 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_22 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_23 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_24 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_25 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_26 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_27 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_28 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_29 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_30 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_31 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_32 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_33 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_34 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_35 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_36 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_37 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_38 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_39 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_40 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_41 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_42 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_43 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_44 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_45 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_46 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_47 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_48 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_49 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_50 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_51 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_52 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_53 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_54 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_55 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_56 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_57 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_58 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_60 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_61 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_62 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_63 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_64 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_65 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_66 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_67 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_68 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_69 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_70 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_71 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_72 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_73 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_74 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_75 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_76 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_77 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_78 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_79 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_80 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_81 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_82 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_83 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_84 | 1.0 | 0.0 | 1.0 |
| EKFECMEK_86 | 0.0 | 1.0 | 0.0 |
| EKFECMEK_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EKFECMEK_19 | 69577 | 76940 | False | Siphoviridae | VOG4581, |
| EKFECMEK_41 | 10742 | 19514 | False | Siphoviridae | VOG9619, |
Phigaro v2.4.0 (Database: Jan. 2024 release)