Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 1 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LAIMKDPM_1 | 154102 | 155307 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LAIMKDPM_46 | 36696 | 37496 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
| LAIMKDPM_46 | 28345 | 29145 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
| LAIMKDPM_46 | 19994 | 20794 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
| LAIMKDPM_46 | 11643 | 12443 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
| LAIMKDPM_162 | 138 | 2111 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
| LAIMKDPM_141 | 63 | 1028 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LAIMKDPM_162 | 186 | 2111 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LAIMKDPM_141 | 63 | 1028 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| LAIMKDPM_141 | 63 | 1028 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| LAIMKDPM_141 | 63 | 1028 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| LAIMKDPM_141 | 63 | 1028 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| LAIMKDPM_46 | 11643 | 12443 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LAIMKDPM_141 | 63 | 1025 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| LAIMKDPM_162 | 186 | 2108 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LAIMKDPM_1 | 154105 | 155307 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| LAIMKDPM_46 | 11643 | 12440 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
| LAIMKDPM_46 | 19994 | 20791 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
| LAIMKDPM_46 | 28345 | 29142 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
| LAIMKDPM_46 | 36696 | 37493 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
| LAIMKDPM_1 | 153604 | 154077 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 98.10 | 92.94 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LAIMKDPM_160 | 42228 | 43808 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LAIMKDPM_159 | 1 | 644 | repUS2 | 646 / 681 | 98.76 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LAIMKDPM_1 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_2 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_3 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_4 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_5 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_6 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_7 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_8 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_9 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_10 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_11 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_12 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_13 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_14 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_15 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_16 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_17 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_18 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_24 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_35 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_46 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_57 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_68 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_79 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_81 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_82 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_83 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_84 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_85 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_86 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_87 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_88 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_89 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_90 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_91 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_92 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_93 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_94 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_95 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_96 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_97 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_98 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_99 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_100 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_101 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_102 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_103 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_104 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_105 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_106 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_107 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_108 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_109 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_110 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_111 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_112 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_113 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_114 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_115 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_116 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_117 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_118 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_119 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_120 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_121 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_122 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_123 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_124 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_125 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_126 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_127 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_128 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_129 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_130 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_131 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_132 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_133 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_134 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_135 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_136 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_137 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_138 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_139 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_140 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_141 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_142 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_143 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_144 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_145 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_146 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_147 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_148 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_149 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_151 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_152 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_153 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_154 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_155 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_156 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_157 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_158 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_159 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_160 | 0.0 | 1.0 | 0.0 |
| LAIMKDPM_161 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_162 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_163 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_164 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_165 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_166 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_167 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_168 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_169 | 1.0 | 0.0 | 1.0 |
| LAIMKDPM_170 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LAIMKDPM_113 | 6134 | 20386 | False | Unknown | VOG4572, |
| LAIMKDPM_114 | 3758 | 9852 | False | Unknown | VOG4652, |
Phigaro v2.4.0 (Database: Jan. 2024 release)