Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDEJLPPD_142 | 157913 | 159838 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| EDEJLPPD_120 | 3581 | 4546 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EDEJLPPD_120 | 3581 | 4546 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| EDEJLPPD_120 | 3581 | 4546 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| EDEJLPPD_120 | 3581 | 4546 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| EDEJLPPD_120 | 3581 | 4546 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| EDEJLPPD_142 | 157913 | 159838 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EDEJLPPD_120 | 3581 | 4543 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| EDEJLPPD_142 | 157913 | 159835 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EDEJLPPD_120 | 137141 | 138721 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EDEJLPPD_1 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_2 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_13 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_24 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_35 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_46 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_57 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_68 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_79 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_85 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_86 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_87 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_88 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_89 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_90 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_91 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_92 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_93 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_94 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_95 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_96 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_97 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_98 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_99 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_100 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_101 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_102 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_103 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_104 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_105 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_106 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_107 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_108 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_109 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_110 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_111 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_112 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_113 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_114 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_115 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_116 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_117 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_118 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_119 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_120 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_121 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_122 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_123 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_124 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_125 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_126 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_127 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_128 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_129 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_130 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_131 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_132 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_133 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_134 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_135 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_137 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_138 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_139 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_140 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_141 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_142 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_143 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_144 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_145 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_146 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_147 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_148 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_149 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_150 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_151 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_152 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_153 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_154 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_155 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_156 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_157 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_158 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_159 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_160 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_161 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_162 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_163 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_164 | 0.0 | 1.0 | 0.0 |
| EDEJLPPD_165 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_166 | 1.0 | 0.0 | 1.0 |
| EDEJLPPD_167 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EDEJLPPD_46 | 1687 | 12787 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)