Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPEFLLHN_31 | 425045 | 425779 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| GPEFLLHN_38 | 47342 | 49267 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GPEFLLHN_31 | 425045 | 425779 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| GPEFLLHN_38 | 47342 | 49267 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
| GPEFLLHN_31 | 426551 | 428014 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| GPEFLLHN_31 | 428140 | 429292 | mef(A) | Erythromycin, Azithromycin | 94.02 | 94.66 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPEFLLHN_31 | 425048 | 425779 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| GPEFLLHN_38 | 47345 | 49267 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
| GPEFLLHN_31 | 426554 | 428014 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| GPEFLLHN_31 | 428131 | 429312 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 95.18 | 96.57 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPEFLLHN_1 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_2 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_11 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_12 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_13 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_14 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_15 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_16 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_17 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_18 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_19 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_20 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_21 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_22 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_23 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_24 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_25 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_26 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_27 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_28 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_29 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_30 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_31 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_32 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_33 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_34 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_35 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_36 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_37 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_38 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_39 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_40 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_41 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_42 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_43 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_44 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_45 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_46 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_47 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_48 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_49 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_50 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_51 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_52 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_53 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_54 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_55 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_56 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_57 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_58 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_59 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_60 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_61 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_63 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_64 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_65 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_66 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_67 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_68 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_69 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_70 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_71 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_73 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_74 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_75 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_76 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_77 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_78 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_79 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_80 | 1.0 | 0.0 | 1.0 |
| GPEFLLHN_86 | 0.0 | 1.0 | 0.0 |
| GPEFLLHN_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)