Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| POGBOIJE_138 | 186391 | 187356 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| POGBOIJE_173 | 15699 | 17672 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
| POGBOIJE_203 | 107 | 2032 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| POGBOIJE_138 | 186391 | 187356 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
| POGBOIJE_173 | 15747 | 17672 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| POGBOIJE_112 | 69672 | 70889 | mef(A) | Erythromycin, Azithromycin | 95.24 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| POGBOIJE_138 | 186391 | 187353 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| POGBOIJE_173 | 15747 | 17669 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| POGBOIJE_112 | 69672 | 70886 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 99.01 | 99.26 | WP_012102963.1 |
| POGBOIJE_203 | 107 | 2029 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| POGBOIJE_52 | 1428 | 2008 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| POGBOIJE_1 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_2 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_3 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_4 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_5 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_6 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_7 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_8 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_9 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_10 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_11 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_12 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_13 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_14 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_15 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_16 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_17 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_18 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_19 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_20 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_21 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_22 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_23 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_24 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_25 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_26 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_27 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_28 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_29 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_30 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_32 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_33 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_34 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_35 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_36 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_37 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_38 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_39 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_40 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_41 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_42 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_43 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_44 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_45 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_46 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_47 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_48 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_49 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_50 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_51 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_52 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_53 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_54 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_56 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_57 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_58 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_59 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_60 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_61 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_62 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_63 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_64 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_65 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_66 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_67 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_68 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_69 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_70 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_71 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_72 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_73 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_74 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_75 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_76 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_77 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_78 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_79 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_80 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_90 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_101 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_112 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_113 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_124 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_130 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_131 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_132 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_133 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_134 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_135 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_136 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_137 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_138 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_139 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_140 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_141 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_142 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_143 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_144 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_145 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_146 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_147 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_148 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_149 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_150 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_151 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_152 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_153 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_154 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_155 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_156 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_157 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_158 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_159 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_160 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_161 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_162 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_163 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_164 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_165 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_166 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_167 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_168 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_169 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_170 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_171 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_172 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_173 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_174 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_175 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_176 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_177 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_178 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_179 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_180 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_181 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_182 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_183 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_184 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_185 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_186 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_187 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_188 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_189 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_190 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_191 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_192 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_193 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_194 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_195 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_196 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_197 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_198 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_199 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_200 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_201 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_202 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_203 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_204 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_205 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_206 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_207 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_208 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_209 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_210 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_211 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_212 | 0.0 | 1.0 | 0.0 |
| POGBOIJE_213 | 1.0 | 0.0 | 1.0 |
| POGBOIJE_214 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| POGBOIJE_160 | 9339 | 15992 | False | Siphoviridae | VOG4581, |
| POGBOIJE_169 | 24479 | 32664 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)