Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HEJAOEFC_74 | 197868 | 199793 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HEJAOEFC_107 | 110884 | 111849 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HEJAOEFC_107 | 110884 | 111849 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| HEJAOEFC_107 | 110884 | 111849 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| HEJAOEFC_107 | 110884 | 111849 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| HEJAOEFC_107 | 110884 | 111849 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| HEJAOEFC_74 | 197868 | 199793 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HEJAOEFC_107 | 110884 | 111846 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| HEJAOEFC_74 | 197868 | 199790 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HEJAOEFC_38 | 80665 | 82245 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HEJAOEFC_1 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_2 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_13 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_24 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_34 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_35 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_36 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_37 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_38 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_39 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_40 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_41 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_42 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_43 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_44 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_45 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_46 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_47 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_48 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_49 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_50 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_51 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_52 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_53 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_54 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_55 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_56 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_57 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_58 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_59 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_60 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_61 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_62 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_63 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_64 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_65 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_66 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_67 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_68 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_69 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_70 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_71 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_72 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_73 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_74 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_75 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_76 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_77 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_78 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_79 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_81 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_82 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_83 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_84 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_85 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_86 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_87 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_88 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_89 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_90 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_91 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_93 | 1.0 | 0.0 | 1.0 |
| HEJAOEFC_96 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_107 | 0.0 | 1.0 | 0.0 |
| HEJAOEFC_118 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HEJAOEFC_37 | 86189 | 90409 | False | Myoviridae | VOG4552, |
| HEJAOEFC_107 | 51599 | 63294 | False | Unknown | VOG0298, |
Phigaro v2.4.0 (Database: Jan. 2024 release)