Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DBOGIELO_237 | 705 | 2630 | tet(Q) | ARO:3000191 | tet(Q) | 89.39 | 97.56 | Z21523.1 |
| DBOGIELO_28 | 158 | 1297 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| DBOGIELO_41 | 140 | 1306 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 100.00 | M37699.1 |
| DBOGIELO_221 | 37 | 900 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| DBOGIELO_71 | 3 | 803 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DBOGIELO_41 | 140 | 1306 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
| DBOGIELO_71 | 3 | 803 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.13 | 100.00 | M17808 |
| DBOGIELO_237 | 705 | 2630 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.61 | 99.95 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DBOGIELO_221 | 37 | 897 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| DBOGIELO_263 | 253 | 1158 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| DBOGIELO_28 | 161 | 1297 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| DBOGIELO_41 | 143 | 1306 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| DBOGIELO_71 | 3 | 800 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DBOGIELO_237 | 708 | 2630 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.86 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DBOGIELO_239 | 11299 | 12879 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DBOGIELO_1 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_2 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_3 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_4 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_5 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_6 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_7 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_8 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_9 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_10 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_11 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_12 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_13 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_14 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_15 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_16 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_17 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_18 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_19 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_20 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_21 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_22 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_23 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_24 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_25 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_26 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_27 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_28 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_29 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_30 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_31 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_32 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_33 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_34 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_35 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_36 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_37 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_38 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_39 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_40 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_41 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_42 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_43 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_44 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_45 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_46 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_47 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_48 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_49 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_50 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_51 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_52 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_53 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_54 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_55 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_56 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_57 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_58 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_59 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_60 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_68 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_79 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_90 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_101 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_112 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_113 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_124 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_135 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_146 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_157 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_168 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_179 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_190 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_201 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_210 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_211 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_212 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_213 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_214 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_215 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_216 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_217 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_218 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_219 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_220 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_221 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_222 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_223 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_224 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_225 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_226 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_227 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_228 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_229 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_230 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_231 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_232 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_233 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_234 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_235 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_236 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_237 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_238 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_239 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_240 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_241 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_242 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_243 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_244 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_245 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_246 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_247 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_248 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_249 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_250 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_251 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_252 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_253 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_254 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_255 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_256 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_257 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_258 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_259 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_260 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_261 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_262 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_263 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_264 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_265 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_266 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_267 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_268 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_269 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_270 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_271 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_272 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_273 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_274 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_275 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_277 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_278 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_279 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_280 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_281 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_282 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_283 | 0.0 | 1.0 | 0.0 |
| DBOGIELO_284 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_286 | 1.0 | 0.0 | 1.0 |
| DBOGIELO_287 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DBOGIELO_210 | 40486 | 50237 | True | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)