Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KOAKFGKP_88 | 170331 | 172256 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| KOAKFGKP_55 | 44764 | 45564 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KOAKFGKP_55 | 44764 | 45564 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| KOAKFGKP_88 | 170331 | 172256 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| KOAKFGKP_52 | 16883 | 17833 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| KOAKFGKP_52 | 16883 | 17833 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| KOAKFGKP_52 | 16883 | 17833 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| KOAKFGKP_52 | 16883 | 17833 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KOAKFGKP_55 | 44767 | 45564 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| KOAKFGKP_88 | 170334 | 172256 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KOAKFGKP_52 | 16882 | 17835 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KOAKFGKP_46 | 31134 | 32714 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KOAKFGKP_1 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_2 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_13 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_24 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_35 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_38 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_39 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_40 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_41 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_42 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_43 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_44 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_45 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_46 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_47 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_48 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_49 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_50 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_51 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_52 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_53 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_54 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_55 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_56 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_57 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_58 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_59 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_60 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_61 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_62 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_63 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_64 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_65 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_66 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_67 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_68 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_69 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_70 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_71 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_72 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_73 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_74 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_75 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_76 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_77 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_78 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_79 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_80 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_81 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_82 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_83 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_84 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_85 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_86 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_87 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_88 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_89 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_90 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_91 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_92 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_93 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_95 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_96 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_97 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_98 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_99 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_100 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_101 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_102 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_103 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_104 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_105 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_106 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_107 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_108 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_109 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_110 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_111 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_112 | 0.0 | 1.0 | 0.0 |
| KOAKFGKP_113 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_114 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_115 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_116 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_117 | 1.0 | 0.0 | 1.0 |
| KOAKFGKP_121 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KOAKFGKP_77 | 138289 | 151181 | False | Unknown | VOG0083, |
Phigaro v2.4.0 (Database: Jan. 2024 release)