Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CFLJKNLG_13 | 52302 | 54227 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| CFLJKNLG_71 | 38475 | 39209 | ErmG | ARO:3000522 | ErmG | 98.77 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CFLJKNLG_71 | 38475 | 39209 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 100.00 | M15332 |
| CFLJKNLG_71 | 36240 | 37703 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| CFLJKNLG_13 | 52302 | 54227 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
| CFLJKNLG_71 | 34900 | 36114 | mef(A) | Erythromycin, Azithromycin | 94.81 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CFLJKNLG_71 | 38475 | 39206 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.18 | 100.00 | WP_063844791.1 |
| CFLJKNLG_13 | 52302 | 54224 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
| CFLJKNLG_71 | 34900 | 36123 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.04 | 100.00 | WP_012102963.1 |
| CFLJKNLG_71 | 36240 | 37700 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFLJKNLG_1 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_2 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_13 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_24 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_35 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_46 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_51 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_52 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_53 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_54 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_55 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_56 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_57 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_58 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_59 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_60 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_61 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_62 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_63 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_64 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_65 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_66 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_67 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_68 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_69 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_70 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_71 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_72 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_73 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_74 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_75 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_76 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_77 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_78 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_79 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_80 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_81 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_82 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_83 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_84 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_85 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_86 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_87 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_88 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_89 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_90 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_91 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_92 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_93 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_94 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_95 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_97 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_98 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_99 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_100 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_102 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_103 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_104 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_105 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_106 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_107 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_108 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_109 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_110 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_111 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_112 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_113 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_114 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_115 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_116 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_117 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_118 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_119 | 1.0 | 0.0 | 1.0 |
| CFLJKNLG_122 | 0.0 | 1.0 | 0.0 |
| CFLJKNLG_133 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)