Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CAGHCKAP_60 | 28803 | 30728 | tet(Q) | ARO:3000191 | tet(Q) | 97.35 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CAGHCKAP_60 | 28803 | 30728 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.09 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CAGHCKAP_60 | 28806 | 30728 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.35 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CAGHCKAP_1 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_2 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_3 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_4 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_5 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_6 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_7 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_8 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_9 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_10 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_11 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_12 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_13 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_14 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_15 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_16 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_17 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_18 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_19 | 1.0 | 0.0 | 1.0 |
| CAGHCKAP_21 | 1.0 | 0.0 | 1.0 |
| CAGHCKAP_22 | 1.0 | 0.0 | 1.0 |
| CAGHCKAP_23 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_24 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_25 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_26 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_34 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_45 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_56 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_58 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_59 | 0.0 | 1.0 | 0.0 |
| CAGHCKAP_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CAGHCKAP_12 | 604787 | 615061 | False | Myoviridae | VOG4691, |
| CAGHCKAP_45 | 327761 | 330775 | False | Unknown | VOG1198, |
| CAGHCKAP_60 | 142440 | 150856 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)