Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CDBDLICO_2 | 125876 | 127801 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CDBDLICO_2 | 125876 | 127801 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CDBDLICO_2 | 125876 | 127798 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CDBDLICO_1 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_2 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_3 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_4 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_5 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_6 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_7 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_8 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_9 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_10 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_11 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_12 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_13 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_24 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_35 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_45 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_46 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_47 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_48 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_49 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_50 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_51 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_52 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_53 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_54 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_55 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_56 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_57 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_58 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_59 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_60 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_61 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_62 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_63 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_64 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_65 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_66 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_67 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_68 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_69 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_70 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_71 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_72 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_73 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_74 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_75 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_76 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_77 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_78 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_79 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_80 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_81 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_82 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_83 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_84 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_85 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_86 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_87 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_88 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_89 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_90 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_91 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_92 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_93 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_94 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_95 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_96 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_97 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_98 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_99 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_100 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_101 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_102 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_103 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_104 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_105 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_106 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_107 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_108 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_109 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_110 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_111 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_112 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_113 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_114 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_115 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_116 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_117 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_118 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_119 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_121 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_122 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_123 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_124 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_125 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_126 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_127 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_128 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_129 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_130 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_131 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_132 | 0.0 | 1.0 | 0.0 |
| CDBDLICO_134 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_135 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_136 | 1.0 | 0.0 | 1.0 |
| CDBDLICO_138 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CDBDLICO_1 | 171945 | 181365 | False | Unknown | VOG0572, |
| CDBDLICO_69 | 13161 | 20705 | False | Siphoviridae | VOG7238, |
| CDBDLICO_88 | 12605 | 14968 | False | Unknown | VOG0327 |
| CDBDLICO_100 | 8574 | 18624 | False | Unknown | VOG1093, |
Phigaro v2.4.0 (Database: Jan. 2024 release)