Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEICMCBI_135 | 15940 | 17914 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEICMCBI_135 | 15988 | 17913 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LEICMCBI_148 | 247572 | 248789 | mef(A) | Erythromycin, Azithromycin | 95.24 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEICMCBI_135 | 15988 | 17910 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LEICMCBI_148 | 247575 | 248789 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 99.01 | 99.26 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEICMCBI_1 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_2 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_3 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_4 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_5 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_6 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_7 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_8 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_9 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_10 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_11 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_12 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_13 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_14 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_15 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_16 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_17 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_18 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_19 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_20 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_21 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_22 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_23 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_24 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_25 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_26 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_27 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_28 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_29 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_30 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_35 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_46 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_57 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_68 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_79 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_90 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_92 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_93 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_94 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_95 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_96 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_97 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_98 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_99 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_100 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_101 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_102 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_103 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_104 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_105 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_106 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_107 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_108 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_109 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_110 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_111 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_112 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_113 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_114 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_115 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_116 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_117 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_118 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_119 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_120 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_121 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_122 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_123 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_124 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_125 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_126 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_127 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_128 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_129 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_130 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_131 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_132 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_133 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_134 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_135 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_136 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_137 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_138 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_139 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_140 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_141 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_142 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_143 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_144 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_145 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_146 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_147 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_148 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_149 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_150 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_151 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_152 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_153 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_154 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_155 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_156 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_157 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_158 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_159 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_160 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_161 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_162 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_163 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_164 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_165 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_166 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_167 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_168 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_169 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_170 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_171 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_172 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_174 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_175 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_176 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_177 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_178 | 1.0 | 0.0 | 1.0 |
| LEICMCBI_179 | 0.0 | 1.0 | 0.0 |
| LEICMCBI_180 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEICMCBI_109 | 9613 | 18254 | False | Siphoviridae | VOG4751, |
Phigaro v2.4.0 (Database: Jan. 2024 release)