Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLJHFHHC_53 | 8233 | 9198 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JLJHFHHC_53 | 8233 | 9198 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| JLJHFHHC_53 | 8233 | 9198 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| JLJHFHHC_53 | 8233 | 9198 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| JLJHFHHC_53 | 8233 | 9198 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLJHFHHC_53 | 8236 | 9198 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JLJHFHHC_25 | 53803 | 55383 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLJHFHHC_1 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_2 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_13 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_22 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_23 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_24 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_25 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_26 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_27 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_28 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_29 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_30 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_31 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_32 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_33 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_34 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_35 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_36 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_37 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_38 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_39 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_40 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_41 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_42 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_43 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_44 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_45 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_46 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_47 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_48 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_49 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_50 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_51 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_52 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_53 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_54 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_55 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_56 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_57 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_58 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_59 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_60 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_61 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_62 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_63 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_65 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_66 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_67 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_68 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_69 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_70 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_71 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_72 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_73 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_74 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_75 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_76 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_77 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_78 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_79 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_80 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_81 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_82 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_83 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_84 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_85 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_86 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_87 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_88 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_89 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_90 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_91 | 1.0 | 0.0 | 1.0 |
| JLJHFHHC_96 | 0.0 | 1.0 | 0.0 |
| JLJHFHHC_107 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)